Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_008202.2 Length=42289 Score E Sequences producing significant alignments: (Bits) Value seq9 2746 0.0 >seq9 Length=46179939 Score = 2746 bits (3044), Expect = 0.0 Identities = 1534/1545 (99%), Gaps = 0/1545 (0%) Strand=Plus/Minus Query 29614 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 29673 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699569 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 27699510 Query 29674 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 29733 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699509 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 27699450 Query 29734 ATNNNNNNNNNNAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCT 29793 || |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699449 ATTCCGATTCCGAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCT 27699390 Query 29794 GATTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 29853 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699389 GATTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 27699330 Query 29854 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 29913 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699329 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 27699270 Query 29914 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGAC 29973 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699269 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGAC 27699210 Query 29974 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 30033 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699209 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 27699150 Query 30034 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 30093 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699149 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 27699090 Query 30094 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 30153 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699089 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 27699030 Query 30154 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCA 30213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699029 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCA 27698970 Query 30214 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 30273 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698969 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 27698910 Query 30274 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 30333 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698909 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 27698850 Query 30334 ACACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTC 30393 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698849 ACACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTC 27698790 Query 30394 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 30453 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698789 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 27698730 Query 30454 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 30513 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698729 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 27698670 Query 30514 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 30573 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698669 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 27698610 Query 30574 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 30633 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698609 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 27698550 Query 30634 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 30693 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698549 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 27698490 Query 30694 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 30753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698489 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 27698430 Query 30754 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 30813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698429 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 27698370 Query 30814 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 30873 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698369 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 27698310 Query 30874 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 30933 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698309 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 27698250 Query 30934 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 30993 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698249 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 27698190 Query 30994 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 31053 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698189 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 27698130 Query 31054 GGATCGACCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 31113 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698129 GGATCGGCCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 27698070 Query 31114 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 31158 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698069 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 27698025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135200990779712