Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq477 138 4e-28 seq82 107 7e-19 >seq477 Length=38297 Score = 138 bits (152), Expect = 4e-28 Identities = 265/389 (68%), Gaps = 4/389 (1%) Strand=Plus/Minus Query 50643 TCATCCAGATGGCGAGATTGCTTCAGAATACCAGCTACATACTCCACCTTTGCTACTTGA 50702 || || | |||||| || ||| || || || || |||||||| || || ||| | Sbjct 31782 TCCTCAACATGGCGCGAAGCCTTGAGGATGCCGGCCACATACTCTACTTTCAGCACTGCA 31723 Query 50703 TGATAAGGCAACGTTATAGGCCTGTGATCCTGGTTAATGCTTGTAAATTGGTATTCTCCA 50762 | | |||| || || || || || || || || ||||| ||||| ||||| | || Sbjct 31722 TTTTGCGGCAGTGTGATTGGTCTATGGTCTTGATTGATGCTGGTAAACTGGTAGCCGCCT 31663 Query 50763 TCTCTGTCATAGCCAAGAACCTTAATCATGTTGTGTCCTTCAACGGTTCTGACAAACACC 50822 || | ||| || ||||||||||||||||| || ||| | || | || || || Sbjct 31662 TCGCGAGTGTAGTTGAGCACCTTAATCATGTTGTGACCGTCAGCTGTGCGAACGAAAACT 31603 Query 50823 TCATCACCCGGGAAT--ACTTTGGTGTTAGGCTCAATGAGTACATATTCTCCTGATTTTA 50880 |||||||| | ||| ||| |||| || || ||||| || | || || || | | Sbjct 31602 TCATCACCAG--AATGCACTGAGGTGCCTGGTTCGATGAGGACGAACTCACCAGACTGAA 31545 Query 50881 TTCTGGGCCACATGCTGTCTCCTTTCACACGAAGACCAAAGGCATCTGGATCATCGCTAT 50940 | | ||||||||||| || || |||||||| || | |||| || |||||||||| Sbjct 31544 TGCGTGGCCACATGCTATCGCCGCGAACACGAAGCCCGTATGCATTCGGGTCATCGCTAT 31485 Query 50941 AAATTTTGAGCCACCCATCGCGCTCTTCGGTCATCTCGATGGCACCATCAACACCAAGAA 51000 |||| || ||||| ||| | || | ||| ||| ||||| |||||||| || | || Sbjct 31484 AAATCTTCAGCCATCCACCACGGTACTCGACCATGTCGATCATGCCATCAACTCCTAAAA 31425 Query 51001 TTGCCTCACCAACCACGCGCACTAACCCT 51029 || |||||||| || | || | |||| Sbjct 31424 CGGCATCACCAACAACAGGGACAAGCCCT 31396 >seq82 Length=657493 Score = 107 bits (118), Expect = 7e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 59896 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 59955 |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 216771 CGGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 216830 Query 59956 TCCAGCAAGGGCCA 59969 ||||||| |||||| Sbjct 216831 TCCAGCAGGGGCCA 216844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192636852262400