Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq362 107 1e-18 seq10 107 1e-18 seq14 95.1 9e-15 seq1 93.3 3e-14 seq3 86.0 4e-12 >seq362 Length=95773 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || || || || ||||| || |||||| ||||| ||| | | Sbjct 39064 AATGCAAATATTTGTCAAGACTTTGACAGGCAAGACTATTACCTTGGAAGTTGAAAGCTC 39123 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || | ||| || ||| || || || || | ||| |||| Sbjct 39124 AGACACAATCGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 39183 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| ||||| ||||| ||||| || || ||| || | || |||||||| Sbjct 39184 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTCGCACGCTTGCAGATTACAA 39243 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || ||||| ||| |||| | ||| | || || ||| Sbjct 39244 CATTCAGAAGGAGTCGACTCTGCATTTGGTTCTGCGTCTTCGTGGTGGA 39292 >seq10 Length=21498587 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| | || || || || ||||| || || ||| ||||| || | | Sbjct 20066429 AATGCAAATATTTGTGAAGACTTTGACAGGCAAGACTATAACCTTGGAAGTTGAGAGCTC 20066370 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | | | ||| || ||| || || || || | ||| |||| Sbjct 20066369 AGACACGATAGACAACGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 20066310 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||||||| ||||| ||||| ||||| || || ||| | ||| |||| |||||||| Sbjct 20066309 ACAGAGACTCATCTTCGCTGGTAAACAGCTTGAGGATGGTAGGACTTTGGCTGATTACAA 20066250 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || |||||||| | || || ||| | || || ||| Sbjct 20066249 CATCCAGAAGGAGTCGACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGA 20066201 >seq14 Length=60807478 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||| || || ||||| || |||||||| |||| ||| || Sbjct 2749831 ATGCAGATTTTCGTTAAGACTTTGACGGGAAAGACCATTACTTTGGAGGTGGAGAGTTCA 2749772 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || || |||||| | || |||| Sbjct 2749771 GACACTATTGACAATGTCAAGACCAAGATTCAGGACAAGGAGGGTATTCCCCCCGACCAG 2749712 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || || || ||||| | || |||| |||||||| Sbjct 2749711 CAGAGGCTGATCTTTGCTGGAAAGCAGCTTGAAGACGGCAGGACATTGGCTGATTACAAC 2749652 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| || || ||||| |||| || ||| |||| ||||| Sbjct 2749651 ATCCAGAAGGAGTCGACCCTTCACTTGGTGTTGCGTCTACGTGGAGG 2749605 >seq1 Length=46747018 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| |||| || || ||||| || || || || | || ||| | Sbjct 38965156 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACGCTAGAGGTGGAGAGTTCC 38965097 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || ||||| || || |||||| | ||| |||| Sbjct 38965096 GACACCATTGACAATGTGAAAGCCAAAATCCAGGACAAGGAGGGTATTCCTCCCGACCAG 38965037 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || ||| | |||||| | || ||||||||||||| Sbjct 38965036 CAGAGGCTTATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTACAAC 38964977 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| ||||| ||||| |||| Sbjct 38964976 ATTCAGAAGGAGTCTACGCTTCACTTGGT 38964948 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||||||||| |||| || || ||||| || || || || |||| ||| | | Sbjct 38965384 ATGCAAATATTCGTTAAGACGTTGACGGGAAAGACGATCACTTTGGAGGTTGAAAGCTCC 38965325 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | || || || || ||||||||| | || | |||| Sbjct 38965324 GACACTATTGACAATGTCAAAGCCAAGATCCAAGACAAAGAGGGTATCCCACCAGACCAG 38965265 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || ||| | |||||| | || ||||||||||||| Sbjct 38965264 CAGAGGTTGATCTTTGCTGGAAAGCAATTGGAAGATGGCAGGACCTTGGCCGATTACAAC 38965205 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| ||||| ||||| |||| Sbjct 38965204 ATTCAGAAGGAGTCTACGCTTCACTTGGT 38965176 >seq3 Length=51870232 Score = 86.0 bits (94), Expect = 4e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| ||||||||||| || || || | |||||| || |||| |||| Sbjct 22921258 ACCAGCAGAGGCTTATCTTTGCCGGAAAGCAGTTGGAAGATGGTCGCACCTTGGCGGATT 22921199 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||| || || |||||||| |||| || ||| |||| ||||| Sbjct 22921198 ACAATATTCAGAAAGAGTCGACTCTTCACTTGGTCTTGCGTCTACGTGGAGG 22921147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358118794247104