Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_008799.1 Length=43282 Score E Sequences producing significant alignments: (Bits) Value seq137 84.2 6e-12 >seq137 Length=409738 Score = 84.2 bits (92), Expect = 6e-12 Identities = 172/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 10328 GTCTTCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGC 10383 ||| |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || Sbjct 26640 GTCGTCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAAT 26585 Query 10384 ATTTTAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATT 10443 |||||||||||| ||||| ||||| | | || || ||||| |||| || | | || Sbjct 26584 CTTTTAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTT 26525 Query 10444 TTAGGTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACA 10500 ||| | || ||||| || || |||||||| ||| |||| ||||||||| || Sbjct 26524 TTACTATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACT 26465 Query 10501 CGGATAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACC 10560 || | | | ||| | |||||||||| | ||||| | |||||| || | ||| Sbjct 26464 CGCACATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACT 26405 Query 10561 TCAATCAAAAA 10571 | || ||||| Sbjct 26404 TAAACGAAAAA 26394 Score = 84.2 bits (92), Expect = 6e-12 Identities = 172/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 10328 GTCTTCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGC 10383 ||| |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || Sbjct 69438 GTCGTCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAAT 69383 Query 10384 ATTTTAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATT 10443 |||||||||||| ||||| ||||| | | || || ||||| |||| || | | || Sbjct 69382 CTTTTAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTT 69323 Query 10444 TTAGGTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACA 10500 ||| | || ||||| || || |||||||| ||| |||| ||||||||| || Sbjct 69322 TTACTATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACT 69263 Query 10501 CGGATAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACC 10560 || | | | ||| | |||||||||| | ||||| | |||||| || | ||| Sbjct 69262 CGCACATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACT 69203 Query 10561 TCAATCAAAAA 10571 | || ||||| Sbjct 69202 TAAACGAAAAA 69192 Score = 84.2 bits (92), Expect = 6e-12 Identities = 172/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 10328 GTCTTCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGC 10383 ||| |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || Sbjct 112159 GTCGTCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAAT 112104 Query 10384 ATTTTAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATT 10443 |||||||||||| ||||| ||||| | | || || ||||| |||| || | | || Sbjct 112103 CTTTTAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTT 112044 Query 10444 TTAGGTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACA 10500 ||| | || ||||| || || |||||||| ||| |||| ||||||||| || Sbjct 112043 TTACTATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACT 111984 Query 10501 CGGATAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACC 10560 || | | | ||| | |||||||||| | ||||| | |||||| || | ||| Sbjct 111983 CGCACATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACT 111924 Query 10561 TCAATCAAAAA 10571 | || ||||| Sbjct 111923 TAAACGAAAAA 111913 Score = 84.2 bits (92), Expect = 6e-12 Identities = 172/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 10328 GTCTTCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGC 10383 ||| |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || Sbjct 155248 GTCGTCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAAT 155193 Query 10384 ATTTTAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATT 10443 |||||||||||| ||||| ||||| | | || || ||||| |||| || | | || Sbjct 155192 CTTTTAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTT 155133 Query 10444 TTAGGTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACA 10500 ||| | || ||||| || || |||||||| ||| |||| ||||||||| || Sbjct 155132 TTACTATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACT 155073 Query 10501 CGGATAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACC 10560 || | | | ||| | |||||||||| | ||||| | |||||| || | ||| Sbjct 155072 CGCACATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACT 155013 Query 10561 TCAATCAAAAA 10571 | || ||||| Sbjct 155012 TAAACGAAAAA 155002 Score = 84.2 bits (92), Expect = 6e-12 Identities = 172/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 10328 GTCTTCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGC 10383 ||| |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || Sbjct 326132 GTCGTCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAAT 326077 Query 10384 ATTTTAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATT 10443 |||||||||||| ||||| ||||| | | || || ||||| |||| || | | || Sbjct 326076 CTTTTAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTT 326017 Query 10444 TTAGGTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACA 10500 ||| | || ||||| || || |||||||| ||| |||| ||||||||| || Sbjct 326016 TTACTATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACT 325957 Query 10501 CGGATAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACC 10560 || | | | ||| | |||||||||| | ||||| | |||||| || | ||| Sbjct 325956 CGCACATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACT 325897 Query 10561 TCAATCAAAAA 10571 | || ||||| Sbjct 325896 TAAACGAAAAA 325886 Score = 84.2 bits (92), Expect = 6e-12 Identities = 172/251 (69%), Gaps = 11/251 (4%) Strand=Plus/Minus Query 10328 GTCTTCCATTCCCTATAAAGAAATTATCGAATACTTA----AATAAAAAAGCAGGAAAGC 10383 ||| |||||||| ||| | ||| ||||| | |||| ||| |||||| ||| || Sbjct 369519 GTCGTCCATTCCTTATGA-GAA--TATCGTTT-CTTATCTTAATGAAAAAGTAGGTAAAT 369464 Query 10384 ATTTTAAACATAATACAGCTAAAACAAAAGATTTTATTAAAGCAAGATGGAATCAAGATT 10443 |||||||||||| ||||| ||||| | | || || ||||| |||| || | | || Sbjct 369463 CTTTTAAACATAAAACAGCAAAAACTAGATCGTTAATCAAAGCTAGATTTAAAGACGGTT 369404 Query 10444 TTAGGTTGGAGGATTTTAAAAAGGTGATTGATATCAAAACAGCTGAATGGTTAA---ACA 10500 ||| | || ||||| || || |||||||| ||| |||| ||||||||| || Sbjct 369403 TTACTATAGATGATTTCAACCGAGTTATTGATATAAAAGCAGCACAATGGTTAAACGACT 369344 Query 10501 CGGATAGCGATAAATACCTTAGACCAGAAACACTTTTTGGCAGTAAATTTGAGGGGTACC 10560 || | | | ||| | |||||||||| | ||||| | |||||| || | ||| Sbjct 369343 CGCACATGAGCCAGTACTTGCGACCAGAAACGTTATTTGGTACTAAATTCGAAAGTTACT 369284 Query 10561 TCAATCAAAAA 10571 | || ||||| Sbjct 369283 TAAACGAAAAA 369273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138378538857728