Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq16 102 7e-17 seq3 102 7e-17 seq114 98.7 9e-16 seq2 98.7 9e-16 >seq1 Length=46747018 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || ||| | || | ||||| || |||||||||||| || || || | | Sbjct 3084333 ACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAGA 3084274 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || | || | |||||||| ||||| |||||||| || | || || ||||| Sbjct 3084273 CCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAAC 3084214 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 ||| |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 3084213 TGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCC 3084154 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT 20463 |||| || || | || ||||| ||||| || || || Sbjct 3084153 GACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 3084116 >seq16 Length=39632211 Score = 102 bits (112), Expect = 7e-17 Identities = 185/271 (68%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 || ||||| ||||| |||| | || || ||| || |||||||| || || || | Sbjct 38025044 ACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCACACCAAGG 38025103 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| || |||| | |||||||| ||| || || ||||| || || || ||||| || Sbjct 38025104 CCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCACATAGAAC 38025163 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||||||||||| | | || | |||||||| ||| Sbjct 38025164 TGCGCAAACATGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGGGTTCCAAGCA 38025223 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAAT 20485 | | ||||| | | ||| | ||||| || || || || | | || | | Sbjct 38025224 GATAATATGATACGCCGATCATCAGGATTGTTCTTCATCTTGTCGATTACGTCTGCGAGC 38025283 Query 20486 TGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 || ||||| || ||||| || || ||||||| Sbjct 38025284 TGATCAAAGCCTTGGCCAGTGTAATCAGCAT 38025314 >seq3 Length=51870232 Score = 102 bits (112), Expect = 7e-17 Identities = 203/301 (67%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 20216 TGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAA 20275 || ||||| || ||||| |||| || || ||||| ||||| |||| | || || Sbjct 35473449 TGGATAAAATCACCGGGAACAAGATCACACACGTGAGCTAGCATGCAAGTAAGAAGAGAG 35473390 Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 ||| ||||||||||| || || | | ||||| || | || | |||||||| || Sbjct 35473389 TAGGAAGCAATGTTAAACGGCACATCAAGGCCCATATCCGCTGAACGCTGATACATCTTG 35473330 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || |||||||| || || || ||||| || || |||| ||| || || || |||||| Sbjct 35473329 CATGAAAGCTCCCCTTCCGCCACATAGAACTGTGCAAACATGTGGCACGGAGGCAGCGCC 35473270 Query 20396 ATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTA 20455 |||| | | ||| | |||||||| ||| | | ||||| | | ||| | ||||| Sbjct 35473269 ATCAGCTTGAGGTCAGAAGGGTTCCAAGCAGATAATATGATACGCCGATCATCAGGATTG 35473210 Query 20456 TTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCA 20515 || || || || | | || | | || ||||| || || || || || |||||| Sbjct 35473209 TTCTTGATCTTGTCGATTACGTCTGCGAGCTGATCAAAGCCTTGACCAGTGTAATCAGCA 35473150 Query 20516 T 20516 | Sbjct 35473149 T 35473149 >seq114 Length=481428 Score = 98.7 bits (108), Expect = 9e-16 Identities = 189/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | || || || |||||||||||| || || || | | Sbjct 455461 ACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAGA 455402 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| ||| | || | |||||||| ||||| || ||||| |||| || || ||||| Sbjct 455401 CCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAAC 455342 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 455341 TGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 455282 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | | ||| | ||||| || || || | || | || || || | Sbjct 455281 GACATTATTATCCGGCGATCATCAGGATTGTTCTTGATCTTGTTAA-CTAC-ATCTA--A 455226 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| || || ||||||| Sbjct 455225 GAGCTGATCAAATCCTTGGCCAGTGTAATCAGCAT 455191 >seq2 Length=31488241 Score = 98.7 bits (108), Expect = 9e-16 Identities = 189/275 (69%), Gaps = 8/275 (3%) Strand=Plus/Minus Query 20246 ACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAA 20305 |||||||| || || | || | || || || |||||||||||| || || || | | Sbjct 13040183 ACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAGA 13040124 Query 20306 CCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAAT 20365 ||||| ||| | || | |||||||| ||||| || ||||| |||| || || ||||| Sbjct 13040123 CCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAAC 13040064 Query 20366 TGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCA 20425 || |||| ||| || || ||||| ||||||| | | ||| | || ||||| || Sbjct 13040063 TGTGCAAACATGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGCT 13040004 Query 20426 CACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAATCCACAATGTACGA 20481 |||| || || | | ||| | ||||| || || || | || | || || || | Sbjct 13040003 GACATTATTATCCGGCGATCATCAGGATTGTTCTTGATCTTGTTAA-CTAC-ATCTA--A 13039948 Query 20482 CAATTGGTCAAACCCCTGGCCTGTATAGTCAGCAT 20516 | || ||||| || ||||| || || ||||||| Sbjct 13039947 GAGCTGATCAAATCCTTGGCCAGTGTAATCAGCAT 13039913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441365208387840