Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq7 122 7e-23 seq15 118 8e-22 seq9 114 1e-20 seq10 113 4e-20 seq5 100 2e-16 seq3 91.5 1e-13 seq1 89.7 4e-13 >seq7 Length=43258566 Score = 122 bits (134), Expect = 7e-23 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || ||||||| |||||||| ||||||||| |||||||| || || Sbjct 12006377 CCTCCTCTCAGGCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCT 12006436 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| |||| ||||| ||||| |||||||| |||||||| ||| || Sbjct 12006437 AGCGTCCTCCCGTCTTCCAGCTGCTTACCGGCGAATATCAGACGCTGCTGGTCCGGAGGG 12006496 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | || || |||||| ||| || ||| || | || | | | || | |||||| Sbjct 12006497 ATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTG---TCGATAGTGTCGGATGATTCG 12006553 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||||||||| ||||||||| Sbjct 12006554 ACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 12006607 >seq15 Length=39600445 Score = 118 bits (130), Expect = 8e-22 Identities = 170/234 (73%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||| || || ||||| |||||||| ||||||||| ||||||||||| | | Sbjct 22431425 CCTCCTCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATC-GGC 22431483 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | |||| | |||| |||| ||||| ||||| || ||||| |||||||||||| ||| Sbjct 22431484 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGTCGCTGCTGATCCGGCGG 22431543 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || |||||| || || ||| || | || | | || | ||||| Sbjct 22431544 GATCCCTTCCTTGTCCTGGATCTTGGCCTTCACATTG---TCGATCGTGTCGGATGATTC 22431600 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 22431601 GACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 22431654 >seq9 Length=46179939 Score = 114 bits (126), Expect = 1e-20 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || || ||||| |||||||| ||||||||| ||||||||||| | | Sbjct 28463177 CCTCCCCTCAGACGGAGAACCAGGTGAAGCGTCGACTCCTTCTGGATGTTGTAATCCG-C 28463235 Query 33961 AATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | |||| | |||| |||| ||||| ||||| || ||||| |||||||| ||| ||| Sbjct 28463236 GAGTGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 28463295 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTC 34076 | | || |||||| ||| || ||| || | || | | || | ||||| Sbjct 28463296 GATACCTTCCTTGTCCTGAATCTTGGCCTTCACATTG---TCGATCGTGTCGGATGATTC 28463352 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || | ||||| || || || ||||| |||||||||||||| |||||||| Sbjct 28463353 GACCTCTAAGGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTT 28463406 >seq10 Length=21498587 Score = 113 bits (124), Expect = 4e-20 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||||||| ||||||| |||||||| ||||||||| |||||||| || || Sbjct 4789358 CCTCCTCTCAGCCGGAGCACCAAGTGAAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCG 4789299 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | | |||| |||| ||||| |||||||| ||||| |||||||| ||| || Sbjct 4789298 AGCGTCCTCCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAGACGCTGCTGGTCCGGTGGG 4789239 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT--AATGGAACTC-ACACTATCAGTAGATTCG 34077 | | || |||||| ||| || ||| || | || | | || | ||||| Sbjct 4789238 ATCCCTTCCTTGTCCTGAATCTTGGCCTTCACATTG---TCGATCGTGTCGGATGATTCA 4789182 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 || | ||||| || || || ||||| |||||||||||||| ||||||||| Sbjct 4789181 ACCTCTAGTGTTATCGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTTTT 4789128 >seq5 Length=35747119 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || | ||| |||||||| || |||||||||||||||||| || ||| Sbjct 18747026 CCTCCACGCAGACGTAACACGAGATGAAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCC 18747085 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || ||||| |||||||||||||| |||| |||||||| || ||| Sbjct 18747086 AATGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCGGGCGGG 18747145 Query 34021 ACGCTCTCTTTGTCC 34035 | | ||| |||||| Sbjct 18747146 ATTCCCTCCTTGTCC 18747160 >seq3 Length=51870232 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| || |||| |||||||| ||||||||| |||||||| || ||||| || | Sbjct 22921384 AGCCTGAGGACCAAGTGAAGCGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAGGTTCTC 22921443 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| ||||| ||||||||||| || || || | |||||||||| || | | ||| Sbjct 22921444 CCGTCTTCCAACTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCCGGAGGGATTCCCTCC 22921503 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 || ||| ||| || ||||| | | | || | || | || |||| || Sbjct 22921504 TTATCCTGAATCTTGGCCTTAACGTTGTCGATGGTGTC-GGAGCTCTCCACCTCGAGGGT 22921562 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||||||| || |||||||| ||||| ||||| Sbjct 22921563 GATGGTCTTTCCGGTGAGAGTTTTCACGAAGATCTGCAT 22921601 >seq1 Length=46747018 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| || | ||| |||||||| || ||||||||||||||||||||| || Sbjct 37533734 CCTCCACGCAGACGTAACACGAGATGAAGAGTAGACTCCTTCTGAATGTTGTAATCGTCC 37533675 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 ||| || | || || | |||||||||||||| |||| |||||||| || ||| Sbjct 37533674 AATGTACGACCATCCTCAAGGTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCAGGCGGG 37533615 Query 34021 ACGCTCTCTTTGTC 34034 | | ||| ||||| Sbjct 37533614 ATTCCCTCCTTGTC 37533601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055741263552