Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_009813.1 Length=48172 Score E Sequences producing significant alignments: (Bits) Value seq341 114 4e-21 seq494 91.5 5e-14 >seq341 Length=107858 Score = 114 bits (126), Expect = 4e-21 Identities = 200/288 (69%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 45970 AAATAGAAGTAAGCAAAATTAATCCGGCTGCATATAATCCGCGTATAGATTTACAGCCCG 46029 || || || || |||||||||||| || |||||||||| || || |||||||| || | Sbjct 16813 AAGTACAAATAGACAAAATTAATCCTGCACCATATAATCCCCGAATTGATTTACAACCGG 16872 Query 46030 ACGATCCAGAATATCaaaaattaaaaaaaTCAATTGAAGAATTTGGCTATATTGACCCAC 46089 ||| |||||||| |||||||||| | ||| |||| |||| || ||| | | || | Sbjct 16873 GAGATGCAGAATATGAAAAATTAAAGCAGTCAGTTGAGAAATTCGGATATGTACAACCGC 16932 Query 46090 TGATTTGGAATGAAAGAACTGGTAATTTAGTCGGTGGCCATCAGCGTTATAAAA---TTT 46146 | | |||||| | | || ||||||||||| || || || ||||| | |||| || Sbjct 16933 TTGTATGGAATAAGCGTACAGGTAATTTAGTTGGAGGACACCAGCGCTTCAAAATCCTTG 16992 Query 46147 TACTCGAGGGAAAACCGGAAAACTTAACTGTATCAGTAGTTAACCT-AGATATAGATCAA 46205 || ||| ||| ||| | || || |||||||| | | || ||| | | Sbjct 16993 TAAATGAGCTGAAATTAGAAGAGGTAGAAGTTTCAGTAGTCGATTTGAGTGATA-CTGAG 17051 Query 46206 GAGAAAGCATTGAATATTGCGTTAAACAAGATAGAAGGTGGATGGAAT 46253 || ||| | |||||||| || | || ||| ||||||| | |||| || Sbjct 17052 GAAAAAACCTTGAATATCACGCTTAATAAGGTAGAAGGCGAATGGGAT 17099 Score = 114 bits (126), Expect = 4e-21 Identities = 200/288 (69%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 45970 AAATAGAAGTAAGCAAAATTAATCCGGCTGCATATAATCCGCGTATAGATTTACAGCCCG 46029 || || || || |||||||||||| || |||||||||| || || |||||||| || | Sbjct 67370 AAGTACAAATAGACAAAATTAATCCTGCACCATATAATCCCCGAATTGATTTACAACCGG 67429 Query 46030 ACGATCCAGAATATCaaaaattaaaaaaaTCAATTGAAGAATTTGGCTATATTGACCCAC 46089 ||| |||||||| |||||||||| | ||| |||| |||| || ||| | | || | Sbjct 67430 GAGATGCAGAATATGAAAAATTAAAGCAGTCAGTTGAGAAATTCGGATATGTACAACCGC 67489 Query 46090 TGATTTGGAATGAAAGAACTGGTAATTTAGTCGGTGGCCATCAGCGTTATAAAA---TTT 46146 | | |||||| | | || ||||||||||| || || || ||||| | |||| || Sbjct 67490 TTGTATGGAATAAGCGTACAGGTAATTTAGTTGGAGGACACCAGCGCTTCAAAATCCTTG 67549 Query 46147 TACTCGAGGGAAAACCGGAAAACTTAACTGTATCAGTAGTTAACCT-AGATATAGATCAA 46205 || ||| ||| ||| | || || |||||||| | | || ||| | | Sbjct 67550 TAAATGAGCTGAAATTAGAAGAGGTAGAAGTTTCAGTAGTCGATTTGAGTGATA-CTGAG 67608 Query 46206 GAGAAAGCATTGAATATTGCGTTAAACAAGATAGAAGGTGGATGGAAT 46253 || ||| | |||||||| || | || ||| ||||||| | |||| || Sbjct 67609 GAAAAAACCTTGAATATCACGCTTAATAAGGTAGAAGGCGAATGGGAT 67656 >seq494 Length=34644 Score = 91.5 bits (100), Expect = 5e-14 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 1365 GGTGCTGATTTATTAATTATCGATGACCCGATTAAAAACCGAGAAGAAGCGGAATCTAAG 1424 || || |||||||||||||| |||||||| |||||||| || |||| || ||||| | Sbjct 33911 GGAGCAGATTTATTAATTATTGATGACCCTATTAAAAATCGCCAAGAGGCCGAATCAATT 33852 Query 1425 ACAATTCGGGATAAGATATACCAGGAGTGGGAGAGCACATTCTTTACTCGTTTGCATAAA 1484 ||| || || ||| | || ||||| || || | ||| ||||| || ||| Sbjct 33851 ACATACCGAAATCGACTATGGGATGAATGGGAAGATACTTTATCTACACGTTTACAAAAA 33792 Query 1485 GGT-CATAGTGTTATCGTTATTATGACTCGGTGGCATGAAGATGACTTAATAGGTAGATT 1543 ||| || || || || | ||| |||| || |||||||| || || ||| |||||||| Sbjct 33791 GGTGCAAAG-GTAATTCTAATTTTGACGCGATGGCATGAGGACGATTTAGCTGGTAGATT 33733 Query 1544 GTTAAAG 1550 |||| || Sbjct 33732 GTTAGAG 33726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154026283169408