Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_009821.1 Length=164270 Score E Sequences producing significant alignments: (Bits) Value seq82 143 3e-29 >seq82 Length=657493 Score = 143 bits (158), Expect = 3e-29 Identities = 301/446 (67%), Gaps = 2/446 (0%) Strand=Plus/Plus Query 135792 CATCAGGTTATTAATCTGTACGCCGTAGTCAAGATGGCGAATGCGGTTATCTTCCACCCC 135851 ||||| |||||||| ||||| | || |||| || || | | || ||||| | || Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 135852 CTTATTGTTCTTTAACACAATCAGACTTTCAAACTCTAAATGCCACATTGGGTAATAGAG 135911 | |||| || ||||| || | | |||||||| || |||||||| ||||| ||| | | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 135912 AGTCGCCGCCCCGCCACGAATACCGCCTTGTGAGCATGACTTAACGGCAGTCTGAAAATG 135971 ||| ||||| || || | || || ||||| || || || || || ||| | |||||||| Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATG 460999 Query 135972 TTTCCAGAATGGGATAACGCCAGTATGACGAACTTCACCATGCCCGATCTTAGATCCTTC 136031 ||| | || || ||| ||||||||| |||| |||| | || | ||| | Sbjct 461000 TTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTAC 461059 Query 136032 CGCGCGAATCATGCCAGCGTTGATACCGATACCAGCACGCTTGCTAATATACTTGATGAT 136091 || ||||| | ||||| || ||||| || || || || | || ||| || | || Sbjct 461060 TGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAAT 461119 Query 136092 TGCATTTGCTGTTTCGTTGATGCCCTGCA-ATGAGTCATCACTTTCAATCACCACACACG 136150 | | | | || |||| || | | || | ||||||| |||||| | ||||| | Sbjct 461120 AGAACTAGTAGTAGCGTTAATAGAATCTAGATTA-TCATCACATTCAATTAAAACACATG 461178 Query 136151 AACTAAATTGGCGTGTTGGGGTACGCACACCTGCCATAATCGGAGTAGGCAGAGAGATTT 136210 | |||||||| || || || || | || || | |||||| || || || | ||| |||| Sbjct 461179 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 461238 Query 136211 GCTTATTCGCAACAGCATTATAAAAA 136236 | | | || |||||||||||| Sbjct 461239 TGAAAGTTGAAATGGCATTATAAAAA 461264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 525526960780800