Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_009877.1 Length=51277 Score E Sequences producing significant alignments: (Bits) Value seq8 86.0 2e-12 >seq8 Length=24646021 Score = 86.0 bits (94), Expect = 2e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 10245 TTCTACGACTCGCAGCG--GGCTCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCC 10302 ||||||||||| ||||| | ||| ||||||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 10303 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 10361 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 10362 CAGCAGTCGGACACCCGCGGAGACGCGCTGACTCACCTGACGCT-CCGAGCGGTGCGCGA 10420 |||| | ||| | | || ||| | || | ||||| | ||| | |||||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTGGCGA-CAGTGCGCGA 19508433 Query 10421 GGTGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCC 10471 ||||||| ||||| || | ||||||||| ||| ||| |||||||||| Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163962120815168