Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_009878.1 Length=52250 Score E Sequences producing significant alignments: (Bits) Value seq18 161 3e-35 seq9 161 3e-35 seq8 134 5e-27 >seq18 Length=36757632 Score = 161 bits (178), Expect = 3e-35 Identities = 397/598 (66%), Gaps = 22/598 (4%) Strand=Plus/Plus Query 44968 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45018 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 45019 GCCA---TGAAGTACACACCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 45072 ||| ||||||| | ||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 45073 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 45132 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 22718313 Query 45133 ACCAGCACCTCACCATCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 45192 || | | ||| || |||| ||||| || ||||||||||| || || | | ||||| Sbjct 22718314 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 22718373 Query 45193 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 45252 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 22718374 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 22718433 Query 45253 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATG 45312 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| | Sbjct 22718434 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 22718490 Query 45313 TCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCACCCC 45372 | || |||||||||||| |||||| |||| | || || ||||||| | Sbjct 22718491 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 22718550 Query 45373 AGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGACTTGAAGA 45430 | ||| |||||||||||||| || || | ||| |||||| | | ||| | Sbjct 22718551 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 22718608 Query 45431 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGTATGTATTTCT 45490 | || | | ||| || |||||||||| |||| | | | | | | || Sbjct 22718609 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 22718668 Query 45491 CAGCCACCGCGTGGACCCCAGTACCCTGCTGAAGCCAGGCCGCTGGGCGTTTCCACAC 45548 |||| || ||||||| | |||| |||||| | |||||||||||||| || | |||||| Sbjct 22718669 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 22718726 >seq9 Length=46179939 Score = 161 bits (178), Expect = 3e-35 Identities = 397/598 (66%), Gaps = 22/598 (4%) Strand=Plus/Minus Query 44968 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 45018 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 45019 GCCA---TGAAGTACACACCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 45072 ||| ||||||| | ||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 45073 AGCGCGTACACCGCGAGCTGAAAGTCATCTCCGGGCTTGAGTCCGGTCTTCCAGTCGACC 45132 ||||||||||| ||||||| ||||| || || || | | |||||||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGG 16532031 Query 45133 ACCAGCACCTCACCATCGAGCACGAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCCA 45192 || | | ||| || |||| ||||| || ||||||||||| || || | | ||||| Sbjct 16532030 ACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCCG 16531971 Query 45193 TCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGGGTACCGTCCGGTGTGTGCCACACC 45252 |||||||||| ||||| ||||| ||| | || ||||||||||| || ||| | | Sbjct 16531970 TCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGATC 16531911 Query 45253 TCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGATG 45312 || ||| || | | || ||| | | | ||| || ||||||| ||| |||| | Sbjct 16531910 TCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGACG 16531854 Query 45313 TCCCATCGACGCTCGATGTCTTCCTGACCTCGGTACCGGCCTGATGCGAACCACCACCCC 45372 | || |||||||||||| |||||| |||| | || || ||||||| | Sbjct 16531853 GTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTCG 16531794 Query 45373 AGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGACTTGAAGA 45430 | ||| |||||||||||||| || || | ||| |||||| | | ||| | Sbjct 16531793 AAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGTGCCAACGGAACA 16531736 Query 45431 TCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGTTTCGAGAGTATGTATTTCT 45490 | || | | ||| || |||||||||| |||| | | | | | | || Sbjct 16531735 TGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACCGCCT 16531676 Query 45491 CAGCCACCGCGTGGACCCCAGTACCCTGCTGAAGCCAGGCCGCTGGGCGTTTCCACAC 45548 |||| || ||||||| | |||| |||||| | |||||||||||||| || | |||||| Sbjct 16531675 CAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACAC 16531618 >seq8 Length=24646021 Score = 134 bits (148), Expect = 5e-27 Identities = 252/363 (69%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 11593 TTCTACGACTCGCAGCG--GGCTCAGCATCACCCGGATCTCCCTCGTAACGATCGGCCCC 11650 ||||||||||| ||||| | ||| || |||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 11651 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 11709 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 11710 CAGCAGGCGGACACCCGCGGGGACGCGCTGACTCACCTGACGCTCCGCG-CGGTGCGCGA 11768 |||||| ||| | | | ||| | || | ||||| || ||| | |||||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGA 19508433 Query 11769 GGTGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCCGGAACCCCG 11828 ||||||| ||||| || | ||||||||| ||| ||| |||||||||| | || | Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCA 19508373 Query 11829 CGTCTTGCGGGGCTGGGCGCGCGTCGCGACGGGCCGGGAGACCTGCGCTTGGTGCCTGAT 11888 || || |||||||||| | ||||| || || || || || ||||| ||||| ||||| Sbjct 19508372 GATCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGAT 19508313 Query 11889 GCTGATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCTGGTCTCGACCTTGATAC 11948 |||||| ||| || || |||| | ||| || | || ||||| |||| || || Sbjct 19508312 GCTGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACAC 19508253 Query 11949 GGA 11951 || Sbjct 19508252 CGA 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167075669938944