Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq82 365 2e-96 >seq82 Length=657493 Score = 365 bits (404), Expect = 2e-96 Identities = 753/1107 (68%), Gaps = 30/1107 (3%) Strand=Plus/Minus Query 51856 AATGGCTTACACTACCTTTTCACAAACCAAGAATAACCAATTACTAGAGCCAATGTTCTT 51915 |||| |||| || | ||||| ||| || ||||| ||| || || || ||||| || Sbjct 459504 AATGTCTTATACAATTTTTTCGAAAAAAAAAAATAATCAACTAAAGGAACCTATGTTTTT 459445 Query 51916 TGGTCAGAACGTTAACGTTGCTCGATATGACCAACAGAAGTACGGCATATTCGAGAAGTT 51975 ||| || || || |||| |||||||| || || || || || || || || || Sbjct 459444 TGGACAACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATT 459385 Query 51976 AATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGGTAGACGTTTCCCAGGACCG 52035 |||||| |||||| | || || || ||| |||| ||||| |||| | || | || | Sbjct 459384 AATTGAAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAG 459325 Query 52036 TATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTTTCACCAGTAATCTTCGTTA 52095 || |||| ||| || |||||| | | ||| |||| ||||| |||||| | || Sbjct 459324 AATAGATTTTCAAAATTTACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATA 459265 Query 52096 TCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAACACAGTTTTGCTTCCAATCGT 52155 ||| | | | ||||| ||||| ||| | | || |||| | ||| || ||||| | Sbjct 459264 TCAAACATTATTAGACTCTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTAT 459205 Query 52156 GAGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGTCTTTCTCCGAGACTATTCATTC 52215 ||||| ||||| || || ||||||||||| |||||||| || || |||||||| || Sbjct 459204 TTCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCACTC 459145 Query 52216 ACGTTCTTATACCCACATCATTCGTAATATTGTTACAGACCCAAGCATTA-TCTTTGATG 52274 |||||||||||| || || ||| | |||||||||| | | | | | ||| | ||||||| Sbjct 459144 ACGTTCTTATACTCATATTATTAGAAATATTGTTA-ATTCTCCATCTTTAATATTTGATG 459086 Query 52275 AAATCGTAACTAACGAACACATCAAGGCACGAGCAATTGGCATCTCCCAATATTATGACG 52334 | || | | || |||| || || | ||||| | || | | ||| ||||||| Sbjct 459085 ATATTATTTCCAATAAACATATTAACGATCGAGCTAAAAATATTTGCATATACTATGACG 459026 Query 52335 AACTCCAGCAACTCACTGCATTATGGCAGTTGTTCGGAGAAGGGAGCCATGCTGGTCAT- 52393 || | || | ||| | ||||| || ||||| ||||| | ||| |||| | Sbjct 459025 AATTAATAAAAATTACTAGTTATTGGCATTTATTCGGTGAAGGTATACATT-TGGTAAAA 458967 Query 52394 -GAAA-----------TTAGTCTGCGTGAGTTGAAGAAGAAGCTGTATTTATGCCTCATG 52441 |||| ||| | | || | | || || || | || ||||| | || Sbjct 458966 GGAAAAAATATTAACATTACTTTAAGTTTGCTTAAAAAAAAATTATACCTATGCTTAATA 458907 Query 52442 TCTATCAATGCATTGGAAGCAATTCGCTTCTATGTCAGCTTTGCTTGCTCATTTGCCTTC 52501 | | |||| ||| ||||||||| | || ||||| || ||||| || ||||| || || Sbjct 458906 AGTGTTAATGTATTAGAAGCAATTAGATTTTATGTTAGTTTTGCATGTTCATTCGCTTTT 458847 Query 52502 GCAGAACGTAAGTTAATGGAAGGAAATGCCAAGATTATTCGCTTAATTGCACGAGATGAA 52561 |||||| | | ||||||||||| ||||| || ||||| | ||||| ||| |||||||| Sbjct 458846 GCAGAAAGAGAATTAATGGAAGGTAATGCAAAAATTATAAGATTAATAGCAAGAGATGAA 458787 Query 52562 GCACTTCATTTGACAGGAACTCAGCACATGCTGAACCTTCTTGCAAGTG-GAAAA--GAT 52618 ||| | ||| | |||||||| || || || |||| ||| | | || ||||| || Sbjct 458786 GCATTGCATCTTACAGGAACACAACATATTTTGAATCTTTTAAGAGATGTGAAAAACAAT 458727 Query 52619 GACCCAGAAATGGGTGAAATTGCTGCTGAATGCCGCCAAGAATGCCA-GAAATTGTTCGA 52677 || ||||||| | ||| || ||||| ||||| |||| ||| | ||| Sbjct 458726 GA---AGAAATGTATCAAACATCTATAGAATGTAAAGAAGAA-GCCATGAATATATTCAT 458671 Query 52678 AGATGCTGCTCAACAAGAGAAGGATTGGGCCGATTATTTGTTCAAAGATGGCTCTATGAT 52737 | || || ||||||| || | ||||| | ||||| || ||||||| || ||| | Sbjct 458670 ACTAGCAGCAGAACAAGAAAAAAAGTGGGCTAAATATTTATTTCAAGATGGATCAATGCT 458611 Query 52738 TGGCTTAAACAAGCAAATTCTATGCGGATATGTGGAATATATCACGAATATTCGTATGCA 52797 ||| | || || | || || || |||| | |||||||| || |||||||||||| | Sbjct 458610 TGGACTCAATAAAGATATACTTTGTCAATATATCGAATATATTACTAATATTCGTATGTA 458551 Query 52798 AGCAGTTGGATT--AGATGCTCCATTCAAAGGTGCAA-CTAACCCGATTCCGTGGATTAA 52854 ||| | || || | |||| | || ||| ||| |||| || ||||| |||||||| Sbjct 458550 TGCAATAGGTTTAAAAATGC-CTTTTGAAA--AACAATCTAATCCTATTCCTTGGATTAA 458494 Query 52855 TGCATGGTTGAATTCGGATGCTGTACAGGTTGCTCCACAGGAAACGGAGATTAGTTCCTA 52914 | | ||||| | ||| ||| || ||| ||||||||| || || || ||||| || || Sbjct 458493 TTCTTGGTTAACTTCAGATTACGTCCAGACTGCTCCACAAGAGACAGAAATTAGCTCATA 458434 Query 52915 CCTGGTCGGGCAAATTGACTCCGAAGT 52941 | || || |||||||| || ||||| Sbjct 458433 TTTAGTAGGACAAATTGATTCAGAAGT 458407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169395632030144