Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011019.1 Length=53572 Score E Sequences producing significant alignments: (Bits) Value seq18 170 7e-38 seq9 170 7e-38 seq8 86.0 2e-12 >seq18 Length=36757632 Score = 170 bits (188), Expect = 7e-38 Identities = 451/674 (67%), Gaps = 45/674 (7%) Strand=Plus/Plus Query 44862 GGAACCGTTCGGTGATCTTCTCCTCG-GTCCAGTCGGTGAGGTCGTACGGATACGTCGGC 44920 ||||| |||||||| || | || ||||| | || |||||||| || | |||||| Sbjct 22718114 GGAACTCCTCGGTGATGG-CTTCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGC 22718172 Query 44921 TT---------GCCGGTCTTCGCCA---TGAAGTAGATCCCGCGCT--GGA-CGTCGAGG 44965 || ||| ||||| ||| |||||||| ||| || ||| | |||| Sbjct 22718173 TTCGGTGCCTTGCCCTTCTTCCCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACA 22718232 Query 44966 CCGTAGAGCTTCTTCAGCGCCAGCGCGTACACCGCCAGCTGGAAGTCATCCCCCGGCTTA 45025 |||||| | || | ||| ||||||||||| | ||||||||||| || ||||| | Sbjct 22718233 CCGTAGGTCATCGCGACCGCGAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGG 22718292 Query 45026 AGGCCAGTCTTGTGGTCTACAACCATCG--GCTCGCCGTCGAGGATCAGTACCGCGTCGA 45083 || ||||||| ||| || ||| |||| ||||||| | | || ||||||| Sbjct 22718293 TTCCCGGTCTTGTAGTCCCGGAC--TCGAAGCTCCCCGTCGACCACGACGACGGCGTCGA 22718350 Query 45084 TGAAGCCTCTGATCTGGATATCCCCGAGCATGAAGTCAAGATCCAGCTCGATCCCGGGCT 45143 || | || | | | |||| | ||||| || || | | |||||||||| | ||| Sbjct 22718351 TGTATCCGCGAACCAGGATCCCGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCG 22718410 Query 45144 TGCCGTCCGGGGTGCTCCATACCTCCAGCGAGGGATGGTTCTCGATCCAGTCGATGACCT 45203 | ||||||||||| ||| | |||| | ||| |||| ||| ||| || || Sbjct 22718411 TACCGTCCGGGGTCACCCAGATCTCCTGGCCCGGAG---TCTCCCGCCACGCGAAGAACT 22718467 Query 45204 TGTCCACCTGCTCCAGCCCGATCTTCCAGCGTCGCTCGACGTCGTCG-GGACCGCGGTAC 45262 | || ||||||||||| |||| | | || ||||||| ||| ||| ||||| |||| Sbjct 22718468 TCTCGACCTGCTCCAGGCCGACGGTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTAC 22718526 Query 45263 GGCCCGGACGAGAACCACCAGTCGAGGTTCGGCGTGACGTCCGTGGACTCGCTGATGCCT 45322 || || ||| | |||||| |||| |||||| || | || ||| | | | | | | Sbjct 22718527 GGACCAGACCACGTCCACCACTCGAAGTTCGGGGTCTCCTCGGTGAAGGCTCCAACGTCG 22718586 Query 45323 TCCTGGTACG-AGTCC---TTGAACACCTCGTACGCCTCTTCGCGGGTCATCGGGCCACC 45378 | ||| || ||| | ||||| || | ||||| || | |||| ||| || Sbjct 22718587 T--TGG--CGTAGTGCCAACGGAACATGTCCTTGGCCTCGTCAAGCGTCAGCGG--CATG 22718640 Query 45379 CGGCTCGAAACCCAGCCGGCGA-AGCATGTAGTGCTCAGCCACCGCGTGGACCGCGGTCC 45437 | | || |||| | ||| || |||||| || ||||||| ||| |||| Sbjct 22718641 CCGTAGGACTCCCATACCTCGACCGC--------CTCAGCGACAGCGTGGAACGCAGTCC 22718692 Query 45438 CCTGCTGGAGCCACGCCGCCGGTCGACGCCAGACCTTGTCAATCCGGGCCAGCTTGTACG 45497 ||||| | ||||| ||||| || || |||| |||||||| ||||| || |||||||||| Sbjct 22718693 CCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACACCTTGTCGATCCGAGCGAGCTTGTACG 22718752 Query 45498 CCATCGGGCATTTC 45511 |||||||||| ||| Sbjct 22718753 CCATCGGGCACTTC 22718766 >seq9 Length=46179939 Score = 170 bits (188), Expect = 7e-38 Identities = 451/674 (67%), Gaps = 45/674 (7%) Strand=Plus/Minus Query 44862 GGAACCGTTCGGTGATCTTCTCCTCG-GTCCAGTCGGTGAGGTCGTACGGATACGTCGGC 44920 ||||| |||||||| || | || ||||| | || |||||||| || | |||||| Sbjct 16532230 GGAACTCCTCGGTGATGG-CTTCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGC 16532172 Query 44921 TT---------GCCGGTCTTCGCCA---TGAAGTAGATCCCGCGCT--GGA-CGTCGAGG 44965 || ||| ||||| ||| |||||||| ||| || ||| | |||| Sbjct 16532171 TTCGGTGCCTTGCCCTTCTTCCCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACA 16532112 Query 44966 CCGTAGAGCTTCTTCAGCGCCAGCGCGTACACCGCCAGCTGGAAGTCATCCCCCGGCTTA 45025 |||||| | || | ||| ||||||||||| | ||||||||||| || ||||| | Sbjct 16532111 CCGTAGGTCATCGCGACCGCGAGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGGTTGG 16532052 Query 45026 AGGCCAGTCTTGTGGTCTACAACCATCG--GCTCGCCGTCGAGGATCAGTACCGCGTCGA 45083 || ||||||| ||| || ||| |||| ||||||| | | || ||||||| Sbjct 16532051 TTCCCGGTCTTGTAGTCCCGGAC--TCGAAGCTCCCCGTCGACCACGACGACGGCGTCGA 16531994 Query 45084 TGAAGCCTCTGATCTGGATATCCCCGAGCATGAAGTCAAGATCCAGCTCGATCCCGGGCT 45143 || | || | | | |||| | ||||| || || | | |||||||||| | ||| Sbjct 16531993 TGTATCCGCGAACCAGGATCCCGTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCG 16531934 Query 45144 TGCCGTCCGGGGTGCTCCATACCTCCAGCGAGGGATGGTTCTCGATCCAGTCGATGACCT 45203 | ||||||||||| ||| | |||| | ||| |||| ||| ||| || || Sbjct 16531933 TACCGTCCGGGGTCACCCAGATCTCCTGGCCCGGAG---TCTCCCGCCACGCGAAGAACT 16531877 Query 45204 TGTCCACCTGCTCCAGCCCGATCTTCCAGCGTCGCTCGACGTCGTCG-GGACCGCGGTAC 45262 | || ||||||||||| |||| | | || ||||||| ||| ||| ||||| |||| Sbjct 16531876 TCTCGACCTGCTCCAGGCCGACGGTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTAC 16531818 Query 45263 GGCCCGGACGAGAACCACCAGTCGAGGTTCGGCGTGACGTCCGTGGACTCGCTGATGCCT 45322 || || ||| | |||||| |||| |||||| || | || ||| | | | | | | Sbjct 16531817 GGACCAGACCACGTCCACCACTCGAAGTTCGGGGTCTCCTCGGTGAAGGCTCCAACGTCG 16531758 Query 45323 TCCTGGTACG-AGTCC---TTGAACACCTCGTACGCCTCTTCGCGGGTCATCGGGCCACC 45378 | ||| || ||| | ||||| || | ||||| || | |||| ||| || Sbjct 16531757 T--TGG--CGTAGTGCCAACGGAACATGTCCTTGGCCTCGTCAAGCGTCAGCGG--CATG 16531704 Query 45379 CGGCTCGAAACCCAGCCGGCGA-AGCATGTAGTGCTCAGCCACCGCGTGGACCGCGGTCC 45437 | | || |||| | ||| || |||||| || ||||||| ||| |||| Sbjct 16531703 CCGTAGGACTCCCATACCTCGACCGC--------CTCAGCGACAGCGTGGAACGCAGTCC 16531652 Query 45438 CCTGCTGGAGCCACGCCGCCGGTCGACGCCAGACCTTGTCAATCCGGGCCAGCTTGTACG 45497 ||||| | ||||| ||||| || || |||| |||||||| ||||| || |||||||||| Sbjct 16531651 CCTGCGGCAGCCAGGCCGCTGGCCGCTGCCACACCTTGTCGATCCGAGCGAGCTTGTACG 16531592 Query 45498 CCATCGGGCATTTC 45511 |||||||||| ||| Sbjct 16531591 CCATCGGGCACTTC 16531578 >seq8 Length=24646021 Score = 86.0 bits (94), Expect = 2e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 11222 TTCTACGACTCGCAGCG--GGCTCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCC 11279 ||||||||||| ||||| | ||| ||||||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 11280 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 11338 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 11339 CAGCAGGCGGACACCCGCGGGGACGCGCTGACGCACCTGACGCTCCGCG-CCGTCCGCGA 11397 |||||| ||| | | | ||| | || | ||||| || ||| | || ||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGA 19508433 Query 11398 GGTGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTTGAGAACGACCC 11448 ||||||| ||||| |||| ||||||||| ||| || |||||||||| Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 171306000814208