Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011020.1 Length=50968 Score E Sequences producing significant alignments: (Bits) Value seq18 167 8e-37 seq9 167 8e-37 seq8 82.4 2e-11 >seq18 Length=36757632 Score = 167 bits (184), Expect = 8e-37 Identities = 405/602 (67%), Gaps = 30/602 (5%) Strand=Plus/Plus Query 42769 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 42819 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 22718134 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 22718193 Query 42820 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 42873 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 22718194 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 22718253 Query 42874 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCC-GACTTCCAGTCAAC 42932 ||||||||||| ||||||||||||| || || || || | |||| | ||| |||| Sbjct 22718254 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 22718312 Query 42933 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCC 42992 |||| | | ||| ||||||| ||| | || ||||||||||| || || | | ||||| Sbjct 22718313 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 22718372 Query 42993 ATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGCGTGCCGTCCGGTGTGTGCCACAC 43052 |||||||||| ||||| ||||| ||| | ||||| |||||||| || ||| | Sbjct 22718373 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 22718432 Query 43053 CTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGAT 43112 ||| ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 22718433 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 22718489 Query 43113 ACCCCAGCGACGCTCGATGTCGTCAGCG-CCGCGGTACGGCCCGGAAGCGAACCACCAGC 43171 | || ||||||||||| || | ||| |||||| || || |||||| Sbjct 22718490 GGTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACT 22718548 Query 43172 CGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTG 43227 ||| ||| |||||||||||||| || || | ||| |||||| | ||| | Sbjct 22718549 CGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGG 22718604 Query 43228 AAGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGATAGCATGTAT 43287 || || || | | ||| || |||||||||| |||| | || | ||| | | Sbjct 22718605 AACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACC 22718664 Query 43288 TTCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGTAGCCAGGCCGCTGGGCGTTTCCAC 43347 |||||| || ||||||| | | || |||||| | |||||||||||||| || | |||| Sbjct 22718665 GCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCAC 22718724 Query 43348 AC 43349 || Sbjct 22718725 AC 22718726 >seq9 Length=46179939 Score = 167 bits (184), Expect = 8e-37 Identities = 405/602 (67%), Gaps = 30/602 (5%) Strand=Plus/Minus Query 42769 TCCCGCGTCCAGTCCGTCAGGTCGTACGGATACGTCGGCTTA---------CCGGTCTTC 42819 || |||||||| | |||||||||||| || | |||||||| || ||||| Sbjct 16532210 TCACGCGTCCACTTCGTCAGGTCGTAGGGCTTGGTCGGCTTCGGTGCCTTGCCCTTCTTC 16532151 Query 42820 GCCA---TGAAGTACACGCCGCGCGT--GATC-TCGACGCCGTACAGCTGTTTCAACGCC 42873 ||| ||||||| ||||| | | || | ||||| ||||| | | ||| Sbjct 16532150 CCCACCATGAAGTAGTCGCCGGTCTTCGGAGCCTCGACACCGTAGGTCATCGCGACCGCG 16532091 Query 42874 AGCGCGTACACCGCGAGCTGGAAGTCATCCCCGGGCTTAGCTCCCGA-CTTCCAGTCAAC 42932 ||||||||||| ||||||||||||| || || || || | ||||| ||| |||| Sbjct 16532090 AGCGCGTACACGCCGAGCTGGAAGTCGTCACCCGG-TTGGTTCCCGGTCTTGTAGTCCCG 16532032 Query 42933 GACTTGCACCTCACCGTCGAGCACCAGCACCGCGTCGATGTAGCCCCGGATCTCTATCCC 42992 |||| | | ||| ||||||| ||| | || ||||||||||| || || | | ||||| Sbjct 16532031 GACTCGAAGCTCCCCGTCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 16531972 Query 42993 ATCGAGCTCGAACTCGATCGCGAGCTCTATCCCCGGCGTGCCGTCCGGTGTGTGCCACAC 43052 |||||||||| ||||| ||||| ||| | ||||| |||||||| || ||| | Sbjct 16531971 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 16531912 Query 43053 CTCTAGGCTCGGGTGGTTGTCGATCCAGTCCAGGGTCTTGTCCACCTGCTGCAGCCCGAT 43112 ||| ||| || | | || ||| | | | ||| || ||||||| ||| |||| Sbjct 16531911 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 16531855 Query 43113 ACCCCAGCGACGCTCGATGTCGTCAGCG-CCGCGGTACGGCCCGGAAGCGAACCACCAGC 43171 | || ||||||||||| || | ||| |||||| || || |||||| Sbjct 16531854 GGTGTACCGGCGCTCGATGTC-TCGCTGACCGTTGTACGGACCAGACCACGTCCACCACT 16531796 Query 43172 CGAGGTTAGGGGTCTCCTCGGT--AGCTTCGTTGATCCCGTCGGCGTACTCGGCC--TTG 43227 ||| ||| |||||||||||||| || || | ||| |||||| | ||| | Sbjct 16531795 CGAAGTTCGGGGTCTCCTCGGTGAAGGCTC--CAACGTCGTTGGCGTAGT--GCCAACGG 16531740 Query 43228 AAGATCTCATAGCACTCTTCGCGCGTCAGCGGTGAGCCGGCGAGCTTCGATAGCATGTAT 43287 || || || | | ||| || |||||||||| |||| | || | ||| | | Sbjct 16531739 AACATGTCCTTGGCCTCGTCAAGCGTCAGCGGCATGCCGTAGGACTCCCATACCTCGACC 16531680 Query 43288 TTCTCAGCCACCGCGTGGACCCCGGTACCCTGCTGTAGCCAGGCCGCTGGGCGTTTCCAC 43347 |||||| || ||||||| | | || |||||| | |||||||||||||| || | |||| Sbjct 16531679 GCCTCAGCGACAGCGTGGAACGCAGTCCCCTGCGGCAGCCAGGCCGCTGGCCGCTGCCAC 16531620 Query 43348 AC 43349 || Sbjct 16531619 AC 16531618 >seq8 Length=24646021 Score = 82.4 bits (90), Expect = 2e-11 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 10153 TTCTACGACTCGCAGCG--GGCTCAGCATCACCCGGATCTACCTCGTAACGATCGGCCCC 10210 ||||||||||| ||||| | ||| || |||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 10211 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 10269 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 10270 CAGCAGGCGGACACCCGCGGGGACGCGCTGACTCACCTGACGCTGCGCG-CCGTCCGCGA 10328 |||||| ||| | | | ||| | || | ||||| || ||| | || ||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGA 19508433 Query 10329 GGTGGAGAACGCAGGCCGTCAGCAGATCATCCACGCCGTCGAGAACGACCC 10379 ||||||| ||||| || | ||||||||| ||| ||| |||||||||| Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCC 19508382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162973336972160