Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011022.1 Length=51621 Score E Sequences producing significant alignments: (Bits) Value seq8 136 1e-27 >seq8 Length=24646021 Score = 136 bits (150), Expect = 1e-27 Identities = 250/361 (69%), Gaps = 4/361 (1%) Strand=Plus/Minus Query 11014 TTCTACGACTCGCAGCGGGCGCAGCACCACCCGGATCTGCCTCGCAACGACCGACCCCTG 11073 ||||||||||| ||||| | ||||||||||| || || |||||||| | | | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTCCACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC-G 19508550 Query 11074 GAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCGCGTGAGCGGATGCA 11132 ||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508549 GAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTGTC 19508490 Query 11133 GCAGTCGGAGACGCGTGGCGACGCGCTGACCCACCTGACGCTACGCG-CGGTGCGCGAGG 11191 |||| | || | | | | ||| | ||| | ||||| || ||| | |||||||| | Sbjct 19508489 GCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGAC-CTTGGCGACAGTGCGCGAAG 19508431 Query 11192 TGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTTGAGAACGACCCGGAACCCCGCG 11251 |||||| ||||| |||| ||||||||| ||| || |||||||||| | || | Sbjct 19508430 TGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCAGA 19508371 Query 11252 TCTTGCGGGGCTGGGCTCGCGTCGCGACCGGCAGGGAGACCTGCGCGTGGTGCCTGATGC 11311 || || ||||||||| | ||||| ||||| | || || ||||| ||||| ||||||| Sbjct 19508370 TCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGATGC 19508311 Query 11312 TGATCAGCCGCGGACCCACGTACGTCCGGGCCGAGACCGCCGGCCTCGACCTTGACACGG 11371 |||| ||| || ||| |||| | ||| || | || || || |||| ||||| | Sbjct 19508310 TGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACACCG 19508251 Query 11372 A 11372 | Sbjct 19508250 A 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165062902828096