Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011267.1 Length=49487 Score E Sequences producing significant alignments: (Bits) Value seq8 140 1e-28 >seq8 Length=24646021 Score = 140 bits (154), Expect = 1e-28 Identities = 253/363 (70%), Gaps = 8/363 (2%) Strand=Plus/Minus Query 10916 TTCTACGACTCGCAGCG--GGCTCAGCACCACCCGGATCTCCCTCGTAACGATCGGCCCC 10973 ||||||||||| ||||| | ||| ||||||||||| || || || ||||| || | Sbjct 19508608 TTCTACGACTCCCAGCGCAGACTC--CACCACCCGGAGCTTCCCCGCAACGAGAGGTTGC 19508551 Query 10974 TGGAGGGGACGAC-GTTCGAGAAGTTCGTCGAGAACATGGACCCGGCTCGTGAGCGGATG 11032 |||| | | | || ||| ||||||| ||||||||| || || || || || || Sbjct 19508550 -GGAGCGACCTCCAGTGGGAGTGGTTCGTCAGGAACATGGAGCCCGCACGAAAGGGGTTG 19508492 Query 11033 CAGCAGGCGGAGACCCGCGGGGACGCGCTGACTCACCTGACGCTC-CGAGCGGTGCGCGA 11091 |||||| || | | | ||| | || | ||||| | ||| | |||||||| Sbjct 19508491 TCGCAGGCCGACTCTCCTCAAGCTGCGGTCACCAAGCTGACCTTGGCGA-CAGTGCGCGA 19508433 Query 11092 GGTGGAGAACGCAGGCCGCCAGCAGATCATCCACGCCGTCGAGAACGACCCGGAACCCCG 11151 ||||||| ||||| |||| ||||||||| ||| ||| |||||||||| | || | Sbjct 19508432 AGTGGAGATGGCAGGTCGCCGACAGATCATCGGCGCTGTCAAGAACGACCCAGCTCCTCA 19508373 Query 11152 CGTCTTGCGGGGCTGGGCGCGCGTCGCGACGGGCCGGGAGACCTGCGCTTGGTGCCTGAT 11211 || || |||||||||| | ||||| || || || || || ||||| ||||| ||||| Sbjct 19508372 GATCGTGAAGGGCTGGGCGAGGGTCGCCACCGGGCGCGAAACATGCGCCTGGTGTCTGAT 19508313 Query 11212 GCTGATCAGCCGCGGACCTACGTACGTCCGGGCCGAGACCGCTGGTCTCGACCTTGACAC 11271 |||||| ||| || || |||| | ||| || | || ||||| |||| ||||| Sbjct 19508312 GCTGATTTCCCGTGGCCCCGAGTACCTTTCGGCGGATAGCGGGGGTCTTCACCTCGACAC 19508253 Query 11272 GGA 11274 || Sbjct 19508252 CGA 19508250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158234214410688