Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011373.1 Length=46872 Score E Sequences producing significant alignments: (Bits) Value seq477 221 4e-53 >seq477 Length=38297 Score = 221 bits (244), Expect = 4e-53 Identities = 800/1233 (65%), Gaps = 34/1233 (3%) Strand=Plus/Minus Query 678 ACCTGTGCGGTCCGGAAGCCCGGCCTAACTCACAGCTGTACAGTGCGGCACAGTCCCGCG 737 ||||| || ||||| || ||| ||||| || ||||| ||| || | || || | Sbjct 20836 ACCTGGTGGGGCCGGAGGCGGCGCCGAACTCGCAACTGTATTCTGCCGCTCGCTCGCGTG 20777 Query 738 ACCAGGCCGCAATCCTGTTCGAGCTGGCGGCAAAGGTGGTTCGGATGAGCCCGGATCTGT 797 | ||||| || || ||||| | ||||| | ||| || ||||||| ||||| || Sbjct 20776 ATCAGGCAGCGATTCTGTTTAACCTGGCCTCCAAGATGTGCCGGATGAACCCGGTACTTA 20717 Query 798 CGGAGTACGTGAACATTCGGGATACCGCCAAGGAATTGCTCTGCGGTGAGCTTGGCACTT 857 | |||| ||| || |||| | || || ||| | | |||| |||||| ||| ||| Sbjct 20716 TGCAGTATGTGGCGATAAAGGATTCGGCGAAAGAAATTCACTGCCCTGAGCTGGGCTCTT 20657 Query 858 TCTACAAGGCGCTCAGCGCGGACGCAGCAACCAAGTTCGGCCTGAGCCCGGCGCTGATAG 917 ||| ||| || || || || || | || | ||| | ||| | | | Sbjct 20656 ATTACCGGGCACTGAGTGCAGAGGCCACCACGGCTTACGGTTTCTCGCCGAGATTTGTCG 20597 Query 918 TTCACGACGAACTGGGCCAGGTG-GTAGGCCCCCGGTCGCAGTTGTATGAAGCCCTGGAA 976 ||||| || ||||||||||| || |||| | | || || |||||||| |||||| Sbjct 20596 CGCACGATGAGCTGGGCCAGGTACGTGGGCCGCGTGATCCACTT-TATGAAGCACTGGAA 20538 Query 977 ACCGCCTCAGCTGCCCAGGAAAGCCCGCTCTCGATCATCATCAGCACGCAGGCGCCAACC 1036 ||||| | || || ||||| | ||| ||||||| |||||||| |||||||| ||| Sbjct 20537 ACCGCGACCGCCGCTCAGGATAACCCTATCTCGATAATCATCAGTACGCAGGCACCA--- 20481 Query 1037 GATGCG---GACCTGCTCAGCTTGTTGATTGACGACGCATTATCCGGAGCCGATCCGCGC 1093 |||||| || || |||||| | ||||||| || | | |||| || || ||||| Sbjct 20480 GATGCGAGCGATCTACTCAGCCTACTGATTGATGATGGCCTGACCGGTGCTGACCCGCG- 20422 Query 1094 AACAAGGTGG-AGATTT--GTACCGCGCCGCTTGATATAGACCCGTTCAGCGAAGAAGCA 1150 || ||||| | | | ||||| ||| || || || |||||| | ||||| Sbjct 20421 --CACGGTGGTACGTCTACAGACCGCCCCGGAAGAGATCGATCCGTTCTCGGTTGAAGCC 20364 Query 1151 ATCCGGGCGGCCAATCCACACTTTGATGACTTCATGAACAAGGACGAGGTGTTCCGCCAG 1210 |||||| ||| || || ||| |||| ||||||||| || | || ||| | | Sbjct 20363 ATCCGGCTGGCAAACCCGGCCTTCGATGTGTTCATGAACCAGAAAGAAGTGCTGGATATG 20304 Query 1211 GCGGCTGATGCCAAACGCCTGCCGAGTCGTGAGCCGGCTTACCGCAACCTGATCCTGAAT 1270 || || || || ||||| ||| || || | | | ||||| | || || Sbjct 20303 GCCGCCAGCGCGAAGCGCCTCCCGTCGCGCCAGGCTGAATTTGAGAACCTTGTGCTTAAC 20244 Query 1271 CAGCGCGTCGAGGCACGCACGCCGTTCGTAAGCCGGTCAGTCTGGCA---AGAGAATGGC 1327 | | || ||||| | ||||||||||||| | |||||||| | || | Sbjct 20243 CGCAGGGTTGAGGCTAAAAGTCCGTTCGTAAGCCAGAACGTCTGGCACATGAACAAAGAG 20184 Query 1328 GGTCAAGGTGAAAGCTTGGACGGCAAGC--GCGTCTATGGCGGCTTGGACCTCTCCAGCG 1385 | | || ||| || | ||| ||| ||||| ||||| ||||||| ||||| | Sbjct 20183 GAACCCGGAGAA--CT--GGCGG-GAGCTACCGTCTGGGGCGGGCTGGACCTTTCCAGTG 20129 Query 1386 TGAACGACCTAACCTGCCTTGTCCTGGTTGGCGAGGACGGCGACGTTGAGCCTACCTTCT 1445 | ||||| ||| || || ||| | | | ||||| || | | |||| Sbjct 20128 TTTCGGACCTTACCGCGCTGGTGCTGAATACAACGCAGGGCGATGTGCACTGCAAGTTCT 20069 Query 1446 GGTTGCCCGGAGAAGGTCTGGCTGAGAAGGCGCGGAATGACCGCGTTCCGTACGACATCT 1505 || | || | |||||| | || || || ||||| || || || || || || ||||| | Sbjct 20068 GGCTACCTGAAGAAGGGTTAGCGGACAAAGCGCGTAACGATCGAGTGCCATATGACATTT 20009 Query 1506 GGGCGCGGGATGGATTCCTCGAAACCACGCCGGGCCGGTCCATCGAATACGAGTTTGTGG 1565 ||||| || | || || || | || || || || | |||||||||| | ||| | | Sbjct 20008 GGGCGAGGCAGGGTTTTCTTAATACGACACCCGGTAAGGCCATCGAATATGCATTTATTG 19949 Query 1566 CTGAATACCTGCGCAGGGTGTTCGACCGCTGCGACGTGCAGTGC-ATCAACTTCGACCGC 1624 | | ||||| | || || || ||| |||| || || | ||||||||| Sbjct 19948 CCCGCGAGCTGCGGCGCGTTTTTGATATCTGTAACGT-AAGGGCGCTGGCTTTCGACCGC 19890 Query 1625 TACAACATGCGTTTCCTGAAGCCATGGCTGGAGCG-TGTCGGCTTCACCGAAGAAGAGAT 1683 ||||||||||||||||| || || | || || ||| ||||| || | ||| | Sbjct 19889 TACAACATGCGTTTCCTTCGTCCGCACCT-CATCGATGCCGGTTTCACTGAGGCGGAGCT 19831 Query 1684 CGGGCGGTTCAAGGAGTTCGGACAGGGTTTCGTCAGCATGTCCCCGGCGCTTCGCGAGTT 1743 || ||||||| ||| ||||||||||| || ||| |||||| || ||||| | ||| | Sbjct 19830 CGAGCGGTTCGTGGAATTCGGACAGGGCTTTGTCTCCATGTCACCTGCGCTCAGGGAGCT 19771 Query 1744 GGAATCTCGGTTGTTGGCGAAGAAGCTGCGCCACGGCAATCACCCGGTACTGACCATGTG 1803 |||| | | || | | | |||| |||||||| || ||| | || ||||| Sbjct 19770 GGAAGCCAAGCTGCTAGGAGCGCAGCTTAAGCACGGCAACCATCCGATCCTCGAAATGTG 19711 Query 1804 CGCGGCGAACGCGATCACGG---TCAGCGACCCGGCTGGTAACCGCAAATTCACCAAGGC 1860 ||| ||||| ||||| ||| |||||| || ||||||||||| || || | Sbjct 19710 CGCCAAAAACGC---CACGGTAATCACCGACCCAGCCGGTAACCGCAAGTTTGTAAAAGG 19654 Query 1861 CAAGGCCACCGGACGCATTGACGGAATGGTGGC 1893 || ||| ||| || || || || |||||||| Sbjct 19653 AAAATCCAGCGGGCGTATCGATGGCATGGTGGC 19621 Score = 107 bits (118), Expect = 6e-19 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 14368 CTATCTGGCATGGCCCACGACGGTATTGATGCTGTTCCGGAGACCGGAACCTGGCTGCTC 14427 || ||||| |||||||| || ||||||||||||||||| || || || |||||| |||| Sbjct 10352 CTTTCTGGTATGGCCCATGATGGTATTGATGCTGTTCCTGAAACGGGTACCTGGTTGCTT 10293 Query 14428 CAAAAGGGGGAGCGGGTAACGACCGCAGAGACGAGTGCGAAACTCGA 14474 |||||||| ||| |||||||||| || | ||| || || ||||| || Sbjct 10292 CAAAAGGGCGAGAGGGTAACGACTGCTGGGACAAGCGCAAAACTGGA 10246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149866351143808