Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011398.1 Length=50930 Score E Sequences producing significant alignments: (Bits) Value seq341 230 8e-56 >seq341 Length=107858 Score = 230 bits (254), Expect = 8e-56 Identities = 401/574 (70%), Gaps = 16/574 (3%) Strand=Plus/Plus Query 955 AGACCTTTTCCGAAAGTAGTTGCTACAGCTCCAACACGACAACAATTATATGACGTACTA 1014 ||||| | || ||| || | ||| ||||||||| || |||||||| || || || Sbjct 21862 AGACCATACCCAAAAATAATATGTACCGCTCCAACAAAGCAGCAATTATACGATGTGCTT 21921 Query 1015 TGGGCTGAAATAGCTAAATGGCTAAGTAATAG----CAAGGTTGAGAAGCTACTTGA-GT 1069 ||||| || || || |||||||| |||||| |||| ||| | | |||| || Sbjct 21922 TGGGCAGAGATTGCAAAATGGCT---TAATAGTTCTCAAG--TGAAAGACCTGTTGAAGT 21976 Query 1070 GGACTAAAACAAAAGTGTATATGAAAGGCTTTGAAGAAAGATGGTGGGCTACAGCTAGAA 1129 |||| ||||| || | ||||||||||| || || || | |||| ||||| || | || Sbjct 21977 GGACGAAAACCAAGATTTATATGAAAGGTTTCGAGGATCGTTGGTTTGCTACGGCAAAAA 22036 Query 1130 CAGCAGTAAAGCCCGAGAATATGCAAGGTTTTCATGAAGATTATATGTTATTTGTTGTTG 1189 ||||| || || |||||||||||||| ||||||||||| ||| ||||| ||| | Sbjct 22037 CAGCAACCCGTCCTGAAAATATGCAAGGTTTCCATGAAGATTACATGCTATTTATTGCCG 22096 Query 1190 ATGAAGCTTCGGGAGTTGCTGACCCCATTATGGAAGCTATATTGGGAACATTATCAGGTG 1249 |||||||||| || | |||||| |||||||| || || | || || ||||| ||| Sbjct 22097 ATGAAGCTTCTGGTATAGCTGACGATATTATGGAGGCCATTCTTGGTACGTTATCTGGTT 22156 Query 1250 CAGAAAATAAGCTTCTTTTATGCGGAAACCCAACTAGAACGAGTGGAACGTTTTACGATA 1309 |||||||||| | || | || || ||||| |||| ||| ||||| |||| ||| Sbjct 22157 CAGAAAATAAATTATTTATGTGTGGTAACCCGACTAAAACTAGTGGGGTCTTTTTTGATT 22216 Query 1310 GCCATAATAGAGACAGAGATTTATATAAAACATTTAAAGTATCTTCTTTAGA--CAGCCC 1367 ||||||| |||||||| || |||||| | |||||||||| | ||| || || Sbjct 22217 CTCATAATAAAGACAGAGCATTGTATAAATCTCATAAAGTATCTAGTGAAGATTCA-CCA 22275 Query 1368 TAGAACATCAAAAGATAATATTGAAATGCTAAAAAGAAAGTACCATGAAGGTTCTGACCC 1427 || || |||| | || ||||||||||| || | |||||| |||||||| || Sbjct 22276 CGGACCAGTAAAA-AGAACATTGAAATGCTTAAGAAAAAGTATGGAGAAGGTTCAGATGT 22334 Query 1428 TTGGCGTGTCAGAGTACTTGGAGAGTTTCCAAAAGGTGAAAGTGATTCTTTAATATCTTT 1487 | || || | ||| || || || || |||||| ||| | || || || | Sbjct 22335 ATATCGGGTTCGTGTAGAGGGTGAATTCCCTCGTGGTGAAGCAGATGCATTTATTTCACT 22394 Query 1488 AGAAGCTGTTGAAACAAGCAC-AATAAGAGAAGT 1520 |||| ||| ||| | ||||| || |||||||| Sbjct 22395 AGAAACTGCAGAAGC-AGCACGGATGAGAGAAGT 22427 Score = 230 bits (254), Expect = 8e-56 Identities = 401/574 (70%), Gaps = 16/574 (3%) Strand=Plus/Plus Query 955 AGACCTTTTCCGAAAGTAGTTGCTACAGCTCCAACACGACAACAATTATATGACGTACTA 1014 ||||| | || ||| || | ||| ||||||||| || |||||||| || || || Sbjct 72423 AGACCATACCCAAAAATAATATGTACCGCTCCAACAAAGCAGCAATTATACGATGTGCTT 72482 Query 1015 TGGGCTGAAATAGCTAAATGGCTAAGTAATAG----CAAGGTTGAGAAGCTACTTGA-GT 1069 ||||| || || || |||||||| |||||| |||| ||| | | |||| || Sbjct 72483 TGGGCAGAGATTGCAAAATGGCT---TAATAGTTCTCAAG--TGAAAGACCTGTTGAAGT 72537 Query 1070 GGACTAAAACAAAAGTGTATATGAAAGGCTTTGAAGAAAGATGGTGGGCTACAGCTAGAA 1129 |||| ||||| || | ||||||||||| || || || | |||| ||||| || | || Sbjct 72538 GGACGAAAACCAAGATTTATATGAAAGGTTTCGAGGATCGTTGGTTTGCTACGGCAAAAA 72597 Query 1130 CAGCAGTAAAGCCCGAGAATATGCAAGGTTTTCATGAAGATTATATGTTATTTGTTGTTG 1189 ||||| || || |||||||||||||| ||||||||||| ||| ||||| ||| | Sbjct 72598 CAGCAACCCGTCCTGAAAATATGCAAGGTTTCCATGAAGATTACATGCTATTTATTGCCG 72657 Query 1190 ATGAAGCTTCGGGAGTTGCTGACCCCATTATGGAAGCTATATTGGGAACATTATCAGGTG 1249 |||||||||| || | |||||| |||||||| || || | || || ||||| ||| Sbjct 72658 ATGAAGCTTCTGGTATAGCTGACGATATTATGGAGGCCATTCTTGGTACGTTATCTGGTT 72717 Query 1250 CAGAAAATAAGCTTCTTTTATGCGGAAACCCAACTAGAACGAGTGGAACGTTTTACGATA 1309 |||||||||| | || | || || ||||| |||| ||| ||||| |||| ||| Sbjct 72718 CAGAAAATAAATTATTTATGTGTGGTAACCCGACTAAAACTAGTGGGGTCTTTTTTGATT 72777 Query 1310 GCCATAATAGAGACAGAGATTTATATAAAACATTTAAAGTATCTTCTTTAGA--CAGCCC 1367 ||||||| |||||||| || |||||| | |||||||||| | ||| || || Sbjct 72778 CTCATAATAAAGACAGAGCATTGTATAAATCTCATAAAGTATCTAGTGAAGATTCA-CCA 72836 Query 1368 TAGAACATCAAAAGATAATATTGAAATGCTAAAAAGAAAGTACCATGAAGGTTCTGACCC 1427 || || |||| | || ||||||||||| || | |||||| |||||||| || Sbjct 72837 CGGACCAGTAAAA-AGAACATTGAAATGCTTAAGAAAAAGTATGGAGAAGGTTCAGATGT 72895 Query 1428 TTGGCGTGTCAGAGTACTTGGAGAGTTTCCAAAAGGTGAAAGTGATTCTTTAATATCTTT 1487 | || || | ||| || || || || |||||| ||| | || || || | Sbjct 72896 ATATCGGGTTCGTGTAGAGGGTGAATTCCCTCGTGGTGAAGCAGATGCATTTATTTCACT 72955 Query 1488 AGAAGCTGTTGAAACAAGCAC-AATAAGAGAAGT 1520 |||| ||| ||| | ||||| || |||||||| Sbjct 72956 AGAAACTGCAGAAGC-AGCACGGATGAGAGAAGT 72988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162851738959104