Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011645.1 Length=37456 Score E Sequences producing significant alignments: (Bits) Value seq341 255 1e-63 >seq341 Length=107858 Score = 255 bits (282), Expect = 1e-63 Identities = 352/490 (72%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 29552 TGAAGTCACCGTATGATTTTTATATTACACCGGATGAATATGAAGAAGCTGAAAAGAATG 29611 |||| || | |||||||||||| |||| || || ||||||||| ||| | ||| ||| Sbjct 12745 TGAAATCTGCATATGATTTTTATGTTACTCCAGAAGAATATGAAATAGCAGCTAAGCATG 12804 Query 29612 GTATTAGTCGCGATTTGTTAACTTGTAGGGTTAGAAAACTTGGATGGGGAAAGGAAGTTG 29671 | |||||||| ||| | |||| | ||||| ||||||| || |||| || || | || Sbjct 12805 GAATTAGTCGTGATCTATTAAATCGTAGGATTAGAAATTCGGGTTGGGATAAAGAGGATG 12864 Query 29672 CAATGACTAAACCACCGAGTTATAACGCAACTGGATGGAAAAATGTAAAAGAAATAGCTT 29731 | |||||||||||| | | | |||| ||||| || ||||||||||||||||||||||||| Sbjct 12865 CGATGACTAAACCATCTATTCATAATGCAACAGGGTGGAAAAATGTAAAAGAAATAGCTT 12924 Query 29732 TGAAAAATGGTATTTCTTATGCCACTTATGTAAAAAGGATTAAAGGAAAGTGGAGGTTGA 29791 | ||||| || |||||| || || |||| | || || ||| |||| ||||| | | Sbjct 12925 TAAAAAACGGAATTTCTCGAGCGACATATGCAGCTAGAATAAAAAGAAACTGGAGAATAA 12984 Query 29792 TTGATGCAATAAGCAAGCCGCCTTTTGATAGGTATCAATCGTTAAAATTGGC-GACACAA 29850 ||||||| |||| | || ||| | |||| || ||| ||||| | || || || | || Sbjct 12985 TTGATGCGATAACGACACCTCCTATAGATAAATACCAAGCGTTAGAGTTAGCTGAGA-AA 13043 Query 29851 GTTAATCCaaaaaaccaaaacaaaaTATTGACAGATCAGCAAGCTAAAATAGCGTCATTA 29910 |||||| | ||| ||||||||| | || | ||| | ||| ||||||||||||||| Sbjct 13044 GTTAATTCTAAATGTCAAAACAAAGTGTTAAATGATGAACAAATGAAAATAGCGTCATTA 13103 Query 29911 AATGGGATAAGTTATAGAACGGCAAAAGCTAGAATTAAACGTTCGAAATGGTCTATTGAA 29970 || ||||| | ||||| |||| | ||||| ||| |||||| | | ||| Sbjct 13104 AACGGGATTTGCTATAGGTTGGCACGTGACAGAATAAAAAAGCAAAAATGGAGTGTAGAA 13163 Query 29971 GAAGCTATTACTACACCAATTTTAACTCCACAGGAGCGCGGGAAAAGAGGGAAAGAAGCA 30030 || || || || || || | ||||| | ||| ||| | || || |||||| | Sbjct 13164 GAGGCGATAACAACCCCTGTGTTAACAAGGGAAGAGTGCGCAAGAAAAGCTAAAGAATCC 13223 Query 30031 TCTTATTGGA 30040 || ||||||| Sbjct 13224 TCCTATTGGA 13233 Score = 255 bits (282), Expect = 1e-63 Identities = 352/490 (72%), Gaps = 2/490 (0%) Strand=Plus/Plus Query 29552 TGAAGTCACCGTATGATTTTTATATTACACCGGATGAATATGAAGAAGCTGAAAAGAATG 29611 |||| || | |||||||||||| |||| || || ||||||||| ||| | ||| ||| Sbjct 63302 TGAAATCTGCATATGATTTTTATGTTACTCCAGAAGAATATGAAATAGCAGCTAAGCATG 63361 Query 29612 GTATTAGTCGCGATTTGTTAACTTGTAGGGTTAGAAAACTTGGATGGGGAAAGGAAGTTG 29671 | |||||||| ||| | |||| | ||||| ||||||| || |||| || || | || Sbjct 63362 GAATTAGTCGTGATCTATTAAATCGTAGGATTAGAAATTCGGGTTGGGATAAAGAGGATG 63421 Query 29672 CAATGACTAAACCACCGAGTTATAACGCAACTGGATGGAAAAATGTAAAAGAAATAGCTT 29731 | |||||||||||| | | | |||| ||||| || ||||||||||||||||||||||||| Sbjct 63422 CGATGACTAAACCATCTATTCATAATGCAACAGGGTGGAAAAATGTAAAAGAAATAGCTT 63481 Query 29732 TGAAAAATGGTATTTCTTATGCCACTTATGTAAAAAGGATTAAAGGAAAGTGGAGGTTGA 29791 | ||||| || |||||| || || |||| | || || ||| |||| ||||| | | Sbjct 63482 TAAAAAACGGAATTTCTCGAGCGACATATGCAGCTAGAATAAAAAGAAACTGGAGAATAA 63541 Query 29792 TTGATGCAATAAGCAAGCCGCCTTTTGATAGGTATCAATCGTTAAAATTGGC-GACACAA 29850 ||||||| |||| | || ||| | |||| || ||| ||||| | || || || | || Sbjct 63542 TTGATGCGATAACGACACCTCCTATAGATAAATACCAAGCGTTAGAGTTAGCTGAGA-AA 63600 Query 29851 GTTAATCCaaaaaaccaaaacaaaaTATTGACAGATCAGCAAGCTAAAATAGCGTCATTA 29910 |||||| | ||| ||||||||| | || | ||| | ||| ||||||||||||||| Sbjct 63601 GTTAATTCTAAATGTCAAAACAAAGTGTTAAATGATGAACAAATGAAAATAGCGTCATTA 63660 Query 29911 AATGGGATAAGTTATAGAACGGCAAAAGCTAGAATTAAACGTTCGAAATGGTCTATTGAA 29970 || ||||| | ||||| |||| | ||||| ||| |||||| | | ||| Sbjct 63661 AACGGGATTTGCTATAGGTTGGCACGTGACAGAATAAAAAAGCAAAAATGGAGTGTAGAA 63720 Query 29971 GAAGCTATTACTACACCAATTTTAACTCCACAGGAGCGCGGGAAAAGAGGGAAAGAAGCA 30030 || || || || || || | ||||| | ||| ||| | || || |||||| | Sbjct 63721 GAGGCGATAACAACCCCTGTGTTAACAAGGGAAGAGTGCGCAAGAAAAGCTAAAGAATCC 63780 Query 30031 TCTTATTGGA 30040 || ||||||| Sbjct 63781 TCCTATTGGA 63790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119735643487616