Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq82 113 1e-20 seq14 96.9 1e-15 >seq82 Length=657493 Score = 113 bits (124), Expect = 1e-20 Identities = 232/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 27565 CCAAGCATTTGCA---TCACACCATTAATTCCAACATTAATCTCAGTGGTGTAGCGGTCT 27621 || |||||||||| | | ||| || || |||| ||| || || |||||||| ||| Sbjct 205863 CCTAGCATTTGCATTGTACCTCCAATATTTACAAC---AATTTCTGTAGTGTAGCGTTCT 205919 Query 27622 TGCCCTGTCTGGTCTTGCCACTTTCTGGTTCTCAGCATTCCCTCGAAATAAACCTGATCA 27681 || | || || ||||| ||||| ||| || ||| || | ||| || ||| | Sbjct 205920 AAACCATTTTGATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAA 205979 Query 27682 CCTTTTTTCACATACTGCCCTACGACTTCAGCAAGTTTCCCAACTACGGCAACACGATGC 27741 |||||| | ||| | ||| | | |||||| | ||| |||| || | | | |||| Sbjct 205980 CCTTTTCGAAGATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGC 206039 Query 27742 CATTCAGTCTGCTCCTTTTGTTCGCCAGTCTGTTTATCTCGCCACTGCTCTGATGTAGCG 27801 |||||||| | || || | ||| ||||| | ||||||| ||| | ||||| || || Sbjct 206040 CATTCAGTTTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCT 206099 Query 27802 ACTGTCAGGTTAGCGAACGCCGTCCCTGATGGTGAATAACGAACCTCCGGGTCTTGCCCG 27861 | ||||| || | | ||| | || || ||||||||| || || ||||| || Sbjct 206100 AATGTCATATTCACTACCGCATTACCATTAGGCATATAACGAACTTCAGGATCTTGACCT 206159 Query 27862 ACCCGGCCTAAGATGATCACCTTATTTACGCCTCTACTAGCCAT 27905 | | || | | || || |||||||| |||||||||||||| Sbjct 206160 AAATGCCCAATCAGAATAACTTTATTTACACCTCTACTAGCCAT 206203 >seq14 Length=60807478 Score = 96.9 bits (106), Expect = 1e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 33431 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACCAAATCCAGATGGATTTCTAAGGG 33490 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| Sbjct 38780475 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT 38780534 Query 33491 CAT 33493 ||| Sbjct 38780535 CAT 38780537 Score = 96.9 bits (106), Expect = 1e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 33431 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGACCAAATCCAGATGGATTTCTAAGGG 33490 ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| Sbjct 38781980 AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGT 38781921 Query 33491 CAT 33493 ||| Sbjct 38781920 CAT 38781918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137527352766336