Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_012741.1 Length=171451 Score E Sequences producing significant alignments: (Bits) Value seq82 172 6e-38 >seq82 Length=657493 Score = 172 bits (190), Expect = 6e-38 Identities = 260/370 (70%), Gaps = 0/370 (0%) Strand=Plus/Plus Query 143038 TTTTCATCGACACCTTTGTTGTTTTTCAGAACGAGCAGATTTTCAACTTCCAAATGCCAA 143097 ||||| || | || | || ||||| | ||| | | | |||||| ||| |||||||| Sbjct 460866 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 460925 Query 143098 ATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACATGATTTAACA 143157 || |||||| | ||| || || || || | | ||| ||||| ||||| ||||| ||| Sbjct 460926 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 460985 Query 143158 GCAGTCTGGAAATGTTTCCAGAATGGAATAACACCAGTATGTTTGACTTCACCCATGCCA 143217 ||| | || |||||||| | || |||||| ||||||||| |||| || | | | Sbjct 460986 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 461045 Query 143218 ATACGAGAACCTTCAGCACGAATCATACCAACGTTAATACCAATACCTGCACGTTTAGAA 143277 ||| || |||| | |||||||| | ||| | ||||||||||| ||||| |||| |||| Sbjct 461046 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 461105 Query 143278 ATGTATTCAATTATTGAGTTTGCAGTTTTGTTAATAGATTTCAGTGAGTCACCTGCTTCA 143337 | |||| | || || | | ||| ||||||||| | || ||| | |||| Sbjct 461106 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 461165 Query 143338 ATAACAACACAAGAACTAAATTGACGGGTTGGAGTACGTGCACCAGCCATAATAGGAGTA 143397 || | |||||| || |||||||| || || ||||| | | |||| |||||| || || Sbjct 461166 ATTAAAACACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTC 461225 Query 143398 GGCAACGAAA 143407 || || |||| Sbjct 461226 GGTAAAGAAA 461235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548505765538560