Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_012788.1 Length=41441 Score E Sequences producing significant alignments: (Bits) Value seq9 2316 0.0 >seq9 Length=46179939 Score = 2316 bits (2568), Expect = 0.0 Identities = 1438/1545 (93%), Gaps = 15/1545 (1%) Strand=Plus/Minus Query 29619 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 29678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699569 CCGCGCGACGCGTCGGACCGTTGTTCCTGGTCGACGCCGAAGCCGCGCGTCTCTACGGCG 27699510 Query 29679 AAGTGTTCAAGGCACGTCGAGCGCTCGACGCCTACACCGGCCGCACCGGCTCCGACAANN 29738 |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 27699509 AAGTGTTCAAGGCACGCCGAGCGCTCGACGCGTACACCGGCCGCACCGGCTCCGACAACG 27699450 Query 29739 NNNNNNNNNNNNAATGAAGGGCACACTCGGCGCCCTGTGCGGGCTGGCCGGCGACGCTCT 29798 |||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 27699449 ATTCCGATTCCGAATGAAGGGCACCCTCGGCGCCCTCTGCGGTCTGGCCGGCGACGCTCT 27699390 Query 29799 GATCGCCGTCGGGTTCGCTCTCCGCGAGCACGATCGCGGGTTCTCGGACTACGAGGCCGG 29858 ||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||||| Sbjct 27699389 GATTGCCGTCGGGTTCGCGCTCCGCGAGCATGACCGCGGGTTCTCGGACTACGAGGCCGG 27699330 Query 29859 CGACTTCCTGACGCCGGCCGAACCGCCGGCGCCGGCTGACGACCTGTCGATTCCGCTCGG 29918 ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 27699329 CGACTACCTGACGCCGGCCGAGTCGCCGGCGCCGGCTGACGATCTGTCGATTCCGCTCGG 27699270 Query 29919 CGACGTCCGCGCAGCACTCGACGACCTGTCCGATTCGAAGCTGCTCAATATCGCCGCGAC 29978 |||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 27699269 CGACGTCCGCGCGGCGCTCGACGACCTGTCCGATTCGAAGCTGCTCAACATCGCCGCGAC 27699210 Query 29979 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGACCTGACCGACGTCGA 30038 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 27699209 CATCATCGCCGGCTGGAAACCGATTCTGCTCAAGACCACCGGCGATCTGACCGACGTCGA 27699150 Query 30039 CGTCCTGGTCGACGCTCTGCGCGATCGCGCCACCCAATATGCCGTCGTCGAGTCAGACGA 30098 |||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||| Sbjct 27699149 CGTCCTGGTCGACGCTCTGCGCGATCGCGCAACCCAATACGCCGTCGTAGAGCTCGACGA 27699090 Query 30099 CGTTCCGCCGGCAGCCGGCGCCCCGACCAACTCGCCCGAACGCGGCGAGTGATGGACGGC 30158 |||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 27699089 CGTTCCGCCGGCTGACGGCGCCCCGAACAACTCGCCCGAACGCGGCGAGTGATGGACGGC 27699030 Query 30159 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCA 30218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27699029 CGGCGCCCCGCTGATACCGGAACGCCGGCCCTGACACCCGAAGGAATAGTTCGAATGTCA 27698970 Query 30219 CACGACAATTTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 30278 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698969 CACGACAATCTACGGCCGATCTGGACTCCCGACGATTACTGGAAGGCCGTTCGCGAAGCG 27698910 Query 30279 GCCGACCACGCCGAACACCGCGGCGCGATCAACGAGGATCCGCATTACGCCAGGTCAGCG 30338 ||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 27698909 GCCGAGCACGCCGAACACCGCGGCGCGATCAACGAAGATCCGCATTACAGCAGGTCAGCG 27698850 Query 30339 ACACCGCCGGCTGAGCCTCGTCGAGGCGCAAGTGCCCGGACTGTGATTCGCGCGCTGCTC 30398 ||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 27698849 ACACCGCCGACCGAGCCTCGTCGAGGCGCCAGTGCCCGGACTGTGATTCGCGCGTTGCTC 27698790 Query 30399 GCCATGGCGTCCGGCGCGGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 30458 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 27698789 GCCATGGCGTCCGGCGCCGTGCTGGTCGCAATGTTCGTGCTCTGGCTGGCGCCGCCGGTC 27698730 Query 30459 AAGGCGGATACGCCGGACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 30518 ||||||||| || || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698729 AAGGCGGATTCGTCGAACTGCCTCACGCAGTTCTGGTTGATTCCGTTCCAGTCGAATACG 27698670 Query 30519 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 30578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698669 CGCACGATCTGCGACGGGCCGATCCAGCCGGACGGATCCTGGCAGCGGGCCCGCGAGTTC 27698610 Query 30579 TGGTCGCCGGCCTACACCGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 30638 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 27698609 TGGTCGCCGGCCTACACGGCGCCGGCGCGCTCGTCCTGCTCTGGTGGCTACCGCTATTCG 27698550 Query 30639 AGCTGCACCTACTACCCGGAGCGCTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 30698 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 27698549 AGCTGCACCTACTACCCGGAGCGTTTCGTTCCGCGGAAGTCGGCCGGCGTCGAGGTCTAT 27698490 Query 30699 CCCGTGCGGCCGGAAACGGTACTCCCCGACGAGCCGGGACACATCGGCTGATGCGCGCGT 30758 |||||||| |||||||| || || |||||||| || ||||||||||||||||||||||| Sbjct 27698489 CCCGTGCGACCGGAAACCGTGCTGCCCGACGAACCCGGACACATCGGCTGATGCGCGCGC 27698430 Query 30759 ATTTCCGCCGCGGCCGGCACCGCGCCAACAAGTTCAGCCACACCGTCTCCGACGTCGAGC 30818 |||| |||||||||||||||||| ||||||||||| ||||||||| |||||||| ||| Sbjct 27698429 TATTCCACCGCGGCCGGCACCGCGCGAACAAGTTCAGTCACACCGTCGCCGACGTCAAGC 27698370 Query 30819 GCTGCCTCGACGCCGAA---------GCCGTCGAGCTCGAC---CGCCGGCGG---GCAA 30863 |||||||||||||||| | || ||||| ||| | ||||| | | Sbjct 27698369 GCTGCCTCGACGCCGAGAAGACCGCGGTCGCCGAGCACGAGGAACACCGGCAGCACGTCG 27698310 Query 30864 CCGCTCTGGTGCTCGACGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 30923 ||| || ||||| | |||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698309 CCGACCTCGTGCTGGCCGGCCGCTGGGCCGAAGTCTGGGGGACCAACCGATGACCACCGT 27698250 Query 30924 CCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 30983 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698249 TCACGACGTGAAGATCGAGCCGCGCTGGTTCGACCGGATCCAGCAGTCCGAGAAGTTCGC 27698190 Query 30984 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGGATCCGCTTCTGGCGCAC 31043 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 27698189 CGAAGTCCGTTACGACGACCGCGACTATCAGGCCGGCGACCGAATCCGCTTCTGGCGCAC 27698130 Query 31044 GGACCTGCCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 31103 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27698129 GGATCGGCCCGAGTACGGGCACAGCATCGAACGCCGGATTACCCACGTGCTGCGCGGCGT 27698070 Query 31104 CGACGGGCTCAGCGACGGCTATGTGGTGCTGTCGCTGTCCGACCC 31148 |||||| ||| | ||||||||||| |||||||||||||||||||| Sbjct 27698069 CGACGGACTCCGAGACGGCTATGTCGTGCTGTCGCTGTCCGACCC 27698025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132487435119936