Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq13 125 9e-24 seq2 125 9e-24 seq6 116 5e-21 seq8 113 6e-20 seq11 98.7 1e-15 >seq13 Length=54295181 Score = 125 bits (138), Expect = 9e-24 Identities = 192/271 (71%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 40048157 GTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTAAGCCCCGGCATGAGCCC 40048216 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| |||| || || || |||||||||||||| ||||| || Sbjct 40048217 TCGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 40048276 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||||| | | | |||||| || | | || | || | ||||||||| || Sbjct 40048277 AGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 40048333 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| ||| | ||||| ||||| | | | | Sbjct 40048334 CCATTGGGCCTTCTTCACGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGATGGTCCCT 40048393 Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTA 127799 || || || || ||||||||| |||||| Sbjct 40048394 CTCCTTGTTG--TCCTTGATGTACGTATCTA 40048422 >seq2 Length=31488241 Score = 125 bits (138), Expect = 9e-24 Identities = 192/271 (71%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 7376989 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 7377048 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || || |||||||||||||| ||||| || Sbjct 7377049 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 7377108 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||| || | | | |||||| || | | || | ||| | |||||||| || Sbjct 7377109 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAAGC 7377165 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 7377166 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 7377225 Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTA 127799 || || || || ||||||||| |||||| Sbjct 7377226 CTCCTTGTTG--TCCTTGATGTACGTATCTA 7377254 Score = 125 bits (138), Expect = 9e-24 Identities = 192/271 (71%), Gaps = 7/271 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| || || || |||||| || || |||||||| || Sbjct 27066447 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 27066388 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||| | |||||| || | || || || |||||||||||||| ||||| || Sbjct 27066387 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 27066328 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 |||||| || | | | |||||| || | | || | ||| | |||||||| || Sbjct 27066327 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAAGC 27066271 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||| || ||||| ||| ||| || |||| ||||| ||||| ||||| | | | | Sbjct 27066270 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGCGCGGAAGAGATGGTCCCT 27066211 Query 127771 TTC--TGATGGATCTTTGATGTACTTATCTA 127799 || || || || ||||||||| |||||| Sbjct 27066210 CTCCTTGTTG--TCCTTGATGTACGTATCTA 27066182 >seq6 Length=47127078 Score = 116 bits (128), Expect = 5e-21 Identities = 187/265 (71%), Gaps = 9/265 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| || || ||||| || ||||| | || || |||||| | ||| |||||||| || Sbjct 44872399 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCC 44872340 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 |||||||||| |||||| |||| || || || |||||||||||||| ||||| || Sbjct 44872339 TCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 44872280 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || ||||| | | | |||||| || | | || | || | ||||||||| || Sbjct 44872279 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 44872223 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA---GTTCCTT 127767 ||| || ||||| ||| ||| || |||| ||| | ||||| |||| | ||| | Sbjct 44872222 CCATTGGGCCTTCTTCGCGACGCAAGGGATGGTTTCAATCGCGCGGAAGAGGTGGTCCCT 44872163 Query 127768 CTTTTCTGATGGATCTTTGATGTAC 127792 || || || | ||| ||||||||| Sbjct 44872162 CTCTT-TGTT--ATCCTTGATGTAC 44872141 >seq8 Length=24646021 Score = 113 bits (124), Expect = 6e-20 Identities = 277/412 (67%), Gaps = 16/412 (4%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || ||||| | || | |||| |||||| |||||| | || || || Sbjct 23191401 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 23191460 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 || | |||| | || || |||| || || ||||||||||||||||| || ||| Sbjct 23191461 GCAACAACAATAACACCAGT---GTTACCCTCAAACCCATCCATCTCAGTCAAAAGCTGA 23191517 Query 12819 TTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGT---TGCTTA 12875 || | ||| || || | |||||||||| | |||| | || | | | ||| || Sbjct 23191518 TTCAAGGTCTGCTCTCTTTCATCATTCCC---TCCACCAATCCCAGTTCCTCTCTGCCTA 23191574 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATT-TTCACGGGCAACTTC 12934 || || || ||||| ||||| | || || |||||||| ||| | | | | ||| Sbjct 23191575 CCAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTG 23191634 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGC 12994 ||| | ||| ||||| ||| ||| || ||||| ||||||||||| || || | | | Sbjct 23191635 AAA-AGATCACGCACCCTCGAGGCCCCAACACCGACAAACATCTCAACGAACTCAGACCC 23191693 Query 12995 GGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 13053 | | || | || ||| || || || ||||| || |||||| ||| | |||||| | Sbjct 23191694 CG-AGATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGGGTTT 23191752 Query 13054 TCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 | || ||||| || || |||| ||| |||| ||||||| ||||| Sbjct 23191753 TACCAGTCCCAGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCACC 23191804 >seq11 Length=45114658 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || ||||| || ||||| | || || |||||| | || |||||||| || |||||| Sbjct 34047527 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 34047468 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | |||||| |||| || || || |||||||||||||| || || || ||||| Sbjct 34047467 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 34047408 Query 127658 GCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACTGT 127717 || | | | |||||| || | | || | || | |||| |||| ||||| || Sbjct 34047407 GCGACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATGGCCCATTGG 34047351 Query 127718 GCCTTTTTCTCGATACATGGGACGGTCTGGATCGC 127752 ||||| ||| ||| || |||| ||||| ||||| Sbjct 34047350 GCCTTCTTCGCGACGCAAGGGATGGTCTCAATCGC 34047316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496647676160