Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_013696.1 Length=42822 Score E Sequences producing significant alignments: (Bits) Value seq341 228 2e-55 >seq341 Length=107858 Score = 228 bits (252), Expect = 2e-55 Identities = 397/570 (70%), Gaps = 8/570 (1%) Strand=Plus/Plus Query 970 TCAGGGCAGGGTGTTGGAAAAACGGCGTTGGAGGC-TGGTGCTATTCTTTGGTTTCTAAC 1028 || || || ||||| || ||||| || ||||| | ||| || | ||||||| || Sbjct 21799 TCCGGCCAAGGTGTGGGGAAAACTGCAATGGAGTCCTGGATCTGTA-TTTGGTTCCTTTG 21857 Query 1029 ATGCCGGCCATATGCAAAAGTAATAGCAACTGCTCCGACGATGAAACAATTATACGATGT 1088 ||| | ||||| ||||| ||||| || ||||| || | | | |||||||||||||| Sbjct 21858 CTGCAGACCATACCCAAAAATAATATGTACCGCTCCAACAAAGCAGCAATTATACGATGT 21917 Query 1089 TCTATGGGCAGAAGTGGCTAAGTGGCTGAATAACAGCTTGATT-AAAGACTTACTTAAAT 1147 || |||||||| | || || ||||| |||| || | | |||||| | | || | Sbjct 21918 GCTTTGGGCAGAGATTGCAAAATGGCTTAATAGTT-CTCAAGTGAAAGACCTGTTGAAGT 21976 Query 1148 GGACCAAGACGAAAATTTATATGGTTGGCGATTCA--GAACGATGGTTTGCTACAGCTCG 1205 |||| || || || ||||||||| || ||| || || ||||||||||| || Sbjct 21977 GGACGAAAACCAAGATTTATATGAAAGGT--TTCGAGGATCGTTGGTTTGCTACGGCAAA 22034 Query 1206 AACAGCAACTAAACCAGAAAATATGCAAGGATTTCACGAAGACCATATGTTAATAGTGGT 1265 ||||||||| || |||||||||||||| || || ||||| | ||| || | | | Sbjct 22035 AACAGCAACCCGTCCTGAAAATATGCAAGGTTTCCATGAAGATTACATGCTATTTATTGC 22094 Query 1266 TGATGAAGCATCAGGTGTTGCTGATCCCATTATGGAAGCAATATTAGGTACTCTTTCAGG 1325 |||||||| || ||| | ||||| |||||||| || || | ||||| | || || Sbjct 22095 CGATGAAGCTTCTGGTATAGCTGACGATATTATGGAGGCCATTCTTGGTACGTTATCTGG 22154 Query 1326 ATTTGACAATAAATTACTAATGTGTGGGAACCCCAACAATATTGAAGGGGTTTTTTATGA 1385 | || ||||||||| | |||||||| ||||| | || | | ||||| |||| ||| Sbjct 22155 TTCAGAAAATAAATTATTTATGTGTGGTAACCCGACTAAAACTAGTGGGGTCTTTTTTGA 22214 Query 1386 TTCGCATAATACAGATAGAGACAAGTATAGAACGCACAAAGTTTCTAGTTACGATAGCAA 1445 ||| ||||||| ||| |||| ||||| | | || ||||| |||||| | ||| Sbjct 22215 TTCTCATAATAAAGACAGAGCATTGTATAAATCTCATAAAGTATCTAGTGAAGATTCACC 22274 Query 1446 ACGTACTAACAAAGAAAATATTCAAATGCTCATCGATAAGTATGGTGAGAATAGCGATGT 1505 ||| || | ||| | || ||| ||||||| | | |||||||| || | ||||| Sbjct 22275 ACGGACCAGTAAAAAGAACATTGAAATGCTTAAGAAAAAGTATGGAGAAGGTTCAGATGT 22334 Query 1506 AGCTCGTGTTCGTATTTATGGTGAATTTCC 1535 | ||| |||||| | | |||||||| || Sbjct 22335 ATATCGGGTTCGTGTAGAGGGTGAATTCCC 22364 Score = 228 bits (252), Expect = 2e-55 Identities = 397/570 (70%), Gaps = 8/570 (1%) Strand=Plus/Plus Query 970 TCAGGGCAGGGTGTTGGAAAAACGGCGTTGGAGGC-TGGTGCTATTCTTTGGTTTCTAAC 1028 || || || ||||| || ||||| || ||||| | ||| || | ||||||| || Sbjct 72360 TCCGGCCAAGGTGTGGGGAAAACTGCAATGGAGTCCTGGATCTGTA-TTTGGTTCCTTTG 72418 Query 1029 ATGCCGGCCATATGCAAAAGTAATAGCAACTGCTCCGACGATGAAACAATTATACGATGT 1088 ||| | ||||| ||||| ||||| || ||||| || | | | |||||||||||||| Sbjct 72419 CTGCAGACCATACCCAAAAATAATATGTACCGCTCCAACAAAGCAGCAATTATACGATGT 72478 Query 1089 TCTATGGGCAGAAGTGGCTAAGTGGCTGAATAACAGCTTGATT-AAAGACTTACTTAAAT 1147 || |||||||| | || || ||||| |||| || | | |||||| | | || | Sbjct 72479 GCTTTGGGCAGAGATTGCAAAATGGCTTAATAGTT-CTCAAGTGAAAGACCTGTTGAAGT 72537 Query 1148 GGACCAAGACGAAAATTTATATGGTTGGCGATTCA--GAACGATGGTTTGCTACAGCTCG 1205 |||| || || || ||||||||| || ||| || || ||||||||||| || Sbjct 72538 GGACGAAAACCAAGATTTATATGAAAGGT--TTCGAGGATCGTTGGTTTGCTACGGCAAA 72595 Query 1206 AACAGCAACTAAACCAGAAAATATGCAAGGATTTCACGAAGACCATATGTTAATAGTGGT 1265 ||||||||| || |||||||||||||| || || ||||| | ||| || | | | Sbjct 72596 AACAGCAACCCGTCCTGAAAATATGCAAGGTTTCCATGAAGATTACATGCTATTTATTGC 72655 Query 1266 TGATGAAGCATCAGGTGTTGCTGATCCCATTATGGAAGCAATATTAGGTACTCTTTCAGG 1325 |||||||| || ||| | ||||| |||||||| || || | ||||| | || || Sbjct 72656 CGATGAAGCTTCTGGTATAGCTGACGATATTATGGAGGCCATTCTTGGTACGTTATCTGG 72715 Query 1326 ATTTGACAATAAATTACTAATGTGTGGGAACCCCAACAATATTGAAGGGGTTTTTTATGA 1385 | || ||||||||| | |||||||| ||||| | || | | ||||| |||| ||| Sbjct 72716 TTCAGAAAATAAATTATTTATGTGTGGTAACCCGACTAAAACTAGTGGGGTCTTTTTTGA 72775 Query 1386 TTCGCATAATACAGATAGAGACAAGTATAGAACGCACAAAGTTTCTAGTTACGATAGCAA 1445 ||| ||||||| ||| |||| ||||| | | || ||||| |||||| | ||| Sbjct 72776 TTCTCATAATAAAGACAGAGCATTGTATAAATCTCATAAAGTATCTAGTGAAGATTCACC 72835 Query 1446 ACGTACTAACAAAGAAAATATTCAAATGCTCATCGATAAGTATGGTGAGAATAGCGATGT 1505 ||| || | ||| | || ||| ||||||| | | |||||||| || | ||||| Sbjct 72836 ACGGACCAGTAAAAAGAACATTGAAATGCTTAAGAAAAAGTATGGAGAAGGTTCAGATGT 72895 Query 1506 AGCTCGTGTTCGTATTTATGGTGAATTTCC 1535 | ||| |||||| | | |||||||| || Sbjct 72896 ATATCGGGTTCGTGTAGAGGGTGAATTCCC 72925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136906562910208