Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq10 107 1e-18 seq362 102 6e-17 seq3 89.7 4e-13 seq9 84.2 2e-11 >seq10 Length=21498587 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| ||||||||||| | ||| ||||| || || || ||||| || Sbjct 20067114 CCACCTCTCAGACGAAGTACCAAATGGAGCGTGGACTCTTTCTGGATGTTGTAATCAGCG 20067173 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| |||| || ||||| | || || | | |||||| || | || Sbjct 20067174 AGTGTGCGTCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 20067233 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACT-GTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || ||| ||| | ||| | | | ||||| | ||| || || Sbjct 20067234 ATGCCTTCCTTGTCCTGAATCTTTGCTTTGA-CGTTGTCAATCGTGTCAGAGCTCTCAAC 20067292 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||||||||||||| || || || || || ||||||||||| Sbjct 20067293 CTCCAAGGTAATTGTTTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 20067340 >seq362 Length=95773 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| || ||| ||||||||||| | ||| ||||| || || || ||||| || Sbjct 38379 CCACCTCTCAGACGAAGTACCAAATGGAGCGTGGACTCTTTCTGGATGTTGTAATCAGCG 38320 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | |||| |||| |||| || ||||| | || || | | |||||| || | || Sbjct 38319 AGTGTGCGTCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGTCTCTGCTGGTCTGGTGGG 38260 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| || ||| ||| | | |||| | |||||| | ||| || | Sbjct 38259 ATGCCTTCCTTGTCCTGAATCTTTGCTTTGACATTGTCGAT--TGTGTCAGAGCTCTCAA 38202 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||||| ||||||||||| || || | || || || ||||||||||| Sbjct 38201 CCTCCAAGGTAATTGTTTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 38153 >seq3 Length=51870232 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||||| ||||| || | ||| ||||| || ||||| ||||| || Sbjct 22921146 GCCTCCACGTAGACGCAAGACCAAGTGAAGAGTCGACTCTTTCTGAATATTGTAATCCGC 22921205 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| ||||| || || ||| |||| || | | |||||| |||| || Sbjct 22921206 CAAGGTGCGACCATCTTCCAACTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCCGGTGG 22921265 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | || || || || || || |||| | ||| || ||||| | ||| ||| Sbjct 22921266 GATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTGTCAATA--GTGTCAGAGCTCTCC 22921323 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || || || || || || || || || ||||||||||| Sbjct 22921324 ACCTCCAAAGTGATAGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 22921373 >seq9 Length=46179939 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | || ||||| || || || || || || Sbjct 43441859 CCACCACGGAGACGTAGCACCAAGTGAAGGGTCGACTCTTTCTGGATGTTGTAGTCAGCT 43441918 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | || || ||| |||| || ||||||||||| |||| || Sbjct 43441919 AGGGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGAGGA 43441978 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| ||||| ||| | ||| | | | ||||| | || ||||| Sbjct 43441979 ATGCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGTTGTCAATGGTGTCGGAACTCTCCAC 43442037 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | |||||| || || || || | || || |||||||||||||| Sbjct 43442038 CTCTAGAGTAATGGTCTTGCCGGTAAGGGTCTTCACGAAGATCTGCAT 43442085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347363774611808