Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_014661.1 Length=164093 Score E Sequences producing significant alignments: (Bits) Value seq82 149 7e-31 >seq82 Length=657493 Score = 149 bits (164), Expect = 7e-31 Identities = 296/436 (68%), Gaps = 2/436 (0%) Strand=Plus/Plus Query 141455 ATTGATTTGAAGGCCATAATCCATGTGACGAATACGGTTTTCTTCAACACCTTTGTTGTT 141514 ||| ||||| | ||||||| | |||||| | | |||||||||| || | || || Sbjct 460829 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 460888 Query 141515 CTTCAACACAATCAAGTTTTCCACTTCAAGGTGCCACATAGGGAAGAACATTGTTGCCGA 141574 || || || | || |||| | ||||| ||||| || || | || || ||||||| Sbjct 460889 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 460948 Query 141575 ACCTTTACGAATACCACCTTGAGAACAGCAATGAACCGCTGAGTTAAAGTGCTTCCAGAA 141634 || | || || |||||||||||| | | || || | ||| || || | || Sbjct 460949 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 461008 Query 141635 AGGTACTAC-GCCAGTGTGTTTGACTTCGCCTGGGCCAATTTTCGAACCTTCAGCTCGAA 141693 ||| | ||| ||||| || ||||||| | ||| |||| | || |||| Sbjct 461009 AGG-AATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAA 461067 Query 141694 TCATGCCTGCGTTAATCCCGATACCTGCTCGCTTAGAAACATACTTAACAATAGCAGAGT 141753 | | || || ||||| || || |||||||| | ||||||||| || ||||||| | Sbjct 461068 TTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAG 461127 Query 141754 TTGCATCATTGATTGAGTCAAGGCTGTCACCAGATTCAATAACTACACATGAACTGAATT 141813 | | | | || || || || || | ||| || ||||||| | |||||||| || |||| Sbjct 461128 TAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAATT 461187 Query 141814 GACGAGTTGGGGTACGAACACCAGCCATAATTGGAGTAGGCAACGAGATTTTACGAGTTG 141873 | ||||| || || | ||| |||| ||||||||| || || || || ||||| ||||| Sbjct 461188 GTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGTTG 461247 Query 141874 AAACAGCTTCATAAAA 141889 ||| || | |||||| Sbjct 461248 AAATGGCATTATAAAA 461263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 524960570522880