Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_014662.1 Length=165540 Score E Sequences producing significant alignments: (Bits) Value seq82 163 3e-35 >seq82 Length=657493 Score = 163 bits (180), Expect = 3e-35 Identities = 305/448 (68%), Gaps = 0/448 (0%) Strand=Plus/Plus Query 137890 ACATCAGGTCGTTGATTTGAACACCATAATCCAAGTGACGAATTCGGTTTTCATCTACGC 137949 |||||| | || ||||| || ||||||| | |||||| | || ||||| || | || Sbjct 460819 ACATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGC 460878 Query 137950 CTTTGTTGTTCTTAAGTACGAGGAGGTTCTCAACTTCAAGGTGCCAGATTGGATAGTACA 138009 | | || || || | || | | | |||| ||||| ||||| |||||||| | | Sbjct 460879 CCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATA 460938 Query 138010 ATGTCGCCGCGCCACCACGGACTCCGCCTTGGGAACAAGACTTAACTGCTGTTTGGATGT 138069 || ||||| ||||| | ||||| ||||| ||||| || || || || |||| | | Sbjct 460939 TAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAAT 460998 Query 138070 GTTTCCAGAAAGGAATAACTCCAGTATGCTTGACTTCTCCGAAGCCGATTTTTGAACCTT 138129 |||| | ||||||||| |||||||| |||| || | || |||| Sbjct 460999 GTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTA 461058 Query 138130 CTGCACGAATCATACCTGCGTTAATGCCGATACCAGCACGTTTAGAGATGTACTCTACAA 138189 |||||||||| | || || ||||| || || || || |||| ||| | || | ||||| Sbjct 461059 CTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAA 461118 Query 138190 TTGATTCAGCTGATTTGTTAATTGACTTCAGTGAATCACCAGCTTCAATAACAACGCAAG 138249 | || || | |||||| || | || |||| || |||||| | ||| || | Sbjct 461119 TAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATG 461178 Query 138250 AACTGAATTGACGAGTAGGAGTACGAGCACCTGCCATGATTGGAGTTGGCAGAGAAATTT 138309 | || ||||| ||||||||||| | | | || | ||| ||||| || || | |||||||| Sbjct 461179 AGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTT 461238 Query 138310 TCTTAGTTGACACAGCATCATAAAAACG 138337 | |||||| | |||| ||||||||| Sbjct 461239 TGAAAGTTGAAATGGCATTATAAAAACG 461266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529590890880000