Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_014663.1 Length=169947 Score E Sequences producing significant alignments: (Bits) Value seq82 113 5e-20 >seq82 Length=657493 Score = 113 bits (124), Expect = 5e-20 Identities = 519/811 (64%), Gaps = 28/811 (3%) Strand=Plus/Plus Query 147748 TTGTTCAATTGAATTCCATAGTCCATGTGACGGATACGGTTTTCTTCAATACCTTTGTTG 147807 || || | ||| | | |||| || | |||||| | | ||||||||||| || | || Sbjct 460827 TTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTA 460886 Query 147808 TTCTTGAGAACCATCAAGTTCTCACATTCAAGGTGCCAAATCGGCCAGTAGCAAGTTGCC 147867 || || | ||| | || | ||| ||||| ||||| || || | | ||||||| Sbjct 460887 TTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCC 460946 Query 147868 GAACCTTTACGAATACCACCCTGTGAACAAGAGTGTACAGCAGCATTTTTAA-GTTTCCA 147926 | || | || || || || ||||| || | ||||||| | || || |||| | Sbjct 460947 GCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCA-CTTTGAAAATGTTTATA 461005 Query 147927 GAATGGTGTAACACCGGTGTGCTTAACTTCACCAGGACCAATCTTAGAACCTTCAGCTCG 147986 || || || ||| || || |||| ||| | ||| | |||| | || || Sbjct 461006 AAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACG 461065 Query 147987 GATTGCTCCTCCACTGATGCCAATACCTGCTCGTTTAGACACATATTTTACAATAGCTGA 148046 ||| ||| || | || ||||| |||||||||| ||| |||||||||||||||| Sbjct 461066 AATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACT 461125 Query 148047 TGTGGTTTCAGTAATTGATTCTAAATCGTCGCCAGTTTCAATCAATACACACGAACTGAA 148106 || || | |||| || |||| || || || |||||| || ||||| || || || Sbjct 461126 AGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCTAAA 461185 Query 148107 TTGACGTGTTGGAGTCCGGACACCTGCAAGAATAGGAGTTGGCAAACTAATTTTGAA--T 148164 ||| || || ||||| | || || | | ||| || || || ||| ||||||||| | Sbjct 461186 TTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGT 461245 Query 148165 TGCGATGCAGCATCATAAAAATCTTTGATGTATTGCA----AACGTTTTGCTGGGTTTTC 148220 || ||| |||| ||||||| | | ||| | || || |||| |||| | | Sbjct 461246 TGAAATG--GCATTATAAAAACGCTGAACGTAATTCATTCTAATATTTT--TGGGATAT- 461300 Query 148221 GTTTTGGTGTAAGCACATACCAATGAGCATGTACAAGAACTGCGGAGTTTCAAAAATTTC 148280 || ||||||| | || || | || || || || | ||||| | |||| Sbjct 461301 -TTAGAAAATAAGCACGCAGATATTAGAACATATAAAAATTGGGCGCTTTCATATATTTT 461359 Query 148281 ACCAGATGAGCGATCTTTTACAAGATACTTATCTTTCATTTGCATTGTACCG--GCATAG 148338 || | ||| | || || | ||| || ||| | ||| || ||||| ||||| Sbjct 461360 CCCGCTTATGCGGTTTTGTATCAAATATTTTCCTTCTAATTG--TTTTACCGCTGCATAT 461417 Query 148339 GTGAAATTGAAGTCGCGATCATGATCAATCATTGCATTCAATGCATCAAATTCTTCACGA 148398 | || || | ||||| ||||| ||| | ||||||| | | | |||||||| | Sbjct 461418 GAAAAGTTCATATCGCGCCAATGATTAATAAAAGCATTCATTTCTAAATATTCTTCATAA 461477 Query 148399 GTATAA-CGTTCAATAATTTCTGGGTCATAGATTCCTA----CATCAGTTTTTGCGACGA 148453 | ||| || ||||| || | ||||| | |||| | || ||||| | Sbjct 461478 GAGTAATATTTTAATAAATT-TTTATCATATTTACCTAAAAGAACCATTTTTT----TTA 461532 Query 148454 CATGATCATACAAATGAGGTGGATCGAATTGCCCATAGACTTCTTTGCGAAGACCGAATT 148513 |||| ||||||||| ||| || || ||||| ||||| ||| ||| | |||| |||| Sbjct 461533 CATGTTCATACAAACAAGGAGGCTCAAATTGACCATAAGCTTTTTTTCTAAGATGGAATA 461592 Query 148514 GTGCAAGATTAGATGCAACGTATTGATAATC 148544 || | | | ||| | ||||||||||| Sbjct 461593 TAGCTAATCTTGCTGCCATATATTGATAATC 461623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543693048318720