Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq15 134 2e-26 seq87 118 1e-21 seq8 113 5e-20 seq11 95.1 1e-14 seq639 82.4 9e-11 >seq15 Length=39600445 Score = 134 bits (148), Expect = 2e-26 Identities = 296/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Plus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| | | ||| || || |||| || | || ||||| | | || ||| Sbjct 9762856 TCAAGAATATCAGCTCTGTTGGTTGCAGCAACCACGATAACACCAGTGTTACCTTCAAAA 9762915 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATA 11655 || ||||| || || ||||||||||| | ||||||||| | ||||| || | | | Sbjct 9762916 CCATCCATCTCCGTCAGAAGCTGGTTAAGCGTCTGTTCTCTTTCATCATT--ACCTCC-A 9762972 Query 11656 CC---ACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACAC 11712 || ||| | | | | | |||| ||||| ||||||||||| | || || |||||| Sbjct 9762973 CCGATACCAGTCCCTCTTTGCCTACCAACAGCATCAATCTCATCCACAAAGACAATACAC 9763032 Query 11713 GGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACG 11772 || ||| | |||| || |||||| ||||| || | | || |||||||| || Sbjct 9763033 GGAGCGTTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCAACA 9763092 Query 11773 AACATCTCAACGAAGTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCG 11832 ||||||||||| || | | |||| || ||| || ||| || |||||||| Sbjct 9763093 AACATCTCAACAAACTCAGAACCAGAGATGGAAAAGAACGGTACACCAGCTTCACCAGCA 9763152 Query 11833 ATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGG 11892 ||||| || | ||| || || || || ||||| | |||| ||||||| | || Sbjct 9763153 ATGGCCTTTGCCAAGAGTGTTTTCCCAGTTCCAGGAGGACCAACGAGAAGAACACCTTTC 9763212 Query 11893 GGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC 11952 |||||| ||||| || | | | |||||||||||| || || ||||| | ||| Sbjct 9763213 GGGATCCGAGCACCGACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCACCACTTCC 9763272 Query 11953 -TCAAGTTCCTCCTTGGC 11969 | ||| || | |||||| Sbjct 9763273 ATGAAG-TCTTGCTTGGC 9763289 >seq87 Length=644924 Score = 118 bits (130), Expect = 1e-21 Identities = 297/446 (67%), Gaps = 24/446 (5%) Strand=Plus/Minus Query 11536 TCAAGAATATCGACACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAA 11595 ||||||||||| | | ||| || || |||| || | || ||||| | | || ||| Sbjct 379103 TCAAGAATATCAGCTCTGTTGGTTGCAGCAACAACGATAACACCAGTGTTACCTTCAAAA 379044 Query 11596 CCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGC--- 11652 || ||||| || || ||||||||||| | ||||||||| | ||||| || | | Sbjct 379043 CCATCCATCTCCGTCAGAAGCTGGTTAAGCGTCTGTTCTCTTTCATCATT--ACCTCCAC 378986 Query 11653 --ATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATAC 11710 |||||| | | | | | |||| ||||| ||||||||||| | || || |||| Sbjct 378985 CAATACCAGTTCCT---CTTTGCCTACCAACAGCATCAATCTCATCCACAAAGACAATAC 378929 Query 11711 ACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTA 11770 | || ||| | |||| || |||||| ||||| || | | || |||||||| | Sbjct 378928 AAGGAGCGTTCTCCTTGGCCTTTTTGAAAAGATCACGGACCCTCGAAGCACCAACACCGA 378869 Query 11771 CGAACATCTCAACGAAGTTTGCGGCAGAACAC----TG--AATGAAGGGAACATTAGACT 11824 | ||||||||||| || | |||||| | || || ||| || || || | Sbjct 378868 CAAACATCTCAACAAACT------CAGAACCCGAGATGGAAAAGAACGGTACGCCAGCTT 378815 Query 11825 CACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGG 11884 ||||||| ||||| || | ||| || || || ||||| || | |||| |||| || Sbjct 378814 CACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCAGTACCGGGAGGACCAACGAGGAGAA 378755 Query 11885 CGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCA 11944 | || |||||| ||||| || | | | |||||||||||| || || |||| Sbjct 378754 CACCTTTCGGGATCCGAGCACCGACCGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCCA 378695 Query 11945 CAATCTCC-TCAAGTTCCTCCTTGGC 11969 | | ||| | ||| || | |||||| Sbjct 378694 CCACTTCCATGAAG-TCTTGCTTGGC 378670 >seq8 Length=24646021 Score = 113 bits (124), Expect = 5e-20 Identities = 326/495 (66%), Gaps = 14/495 (3%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | || ||||||||||| | | || ||||| Sbjct 23191401 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 23191460 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || ||||| | | || || || ||||| || || | |||||| || Sbjct 23191461 GCAACAACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAAAGCTGATTC 23191520 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCAT--ACCA---CCTGCCGAACGCTTCTTAC 11677 | ||||| || | ||||| || | | |||| || | | || | ||| Sbjct 23191521 AAGGTCTGCTCTCTTTCATCATTC-----CCTCCACCAATCCCAGTTCCTCTCTGCCTAC 23191575 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | ||||| |||||||| || | || || |||||||| || | |||| | || Sbjct 23191576 CAACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTGA 23191635 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 |||| ||||| || | | || |||||||| || |||||||||||||| | | | | Sbjct 23191636 AAAGATCACGCACCCTCGAGGCCCCAACACCGACAAACATCTCAACGAACTCAGACCCCG 23191695 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | | || | ||| || ||| | ||||||||| |||||| || | ||| || ||| Sbjct 23191696 AG-ATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGGGTTTTA 23191754 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || ||||| | |||| |||| ||| | || |||||| ||||| || | Sbjct 23191755 CCAGTCCCAGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCACCGACCGCAGTG 23191814 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCC-TCAAGTTCCTCCTTGGCGGAGTC 11975 | | ||||||||||||||| || ||||| | ||| | ||| || | |||||| || Sbjct 23191815 AACCTCTCAGGCTTCTTGAGAAACTCCACCACTTCCATGAAG-TCTTGCTTGGCTTCATC 23191873 Query 11976 GATACCCTCAACATC 11990 || || ||||||| Sbjct 23191874 GACTCCAGCAACATC 23191888 >seq11 Length=45114658 Score = 95.1 bits (104), Expect = 1e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 119514 CCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTC 119573 ||||| || |||||||| | ||| || |||| | ||||||||||| |||| ||| Sbjct 34047527 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 34047468 Query 119574 TTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAA 119633 || ||||| ||||| | || || || || || |||||||| || || || || ||||| Sbjct 34047467 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 34047408 Query 119634 GCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCACTTGAGAGCCCAGTTGGCC 119693 |||| | | ||| || |||| |||| ||||| |||| | | ||||| | |||| Sbjct 34047407 GCGACGATCCTCTCGGCGAAAGTCTGAGATCCGTCGATCCACGTCATGGCCCATTGGGCC 34047348 Query 119694 TT 119695 || Sbjct 34047347 TT 34047346 >seq639 Length=13445 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| | ||||| | | |||||| ||||||||||||||| Sbjct 12232 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 12173 Query 136777 GGGAACAGCTTTT 136789 |||| |||||||| Sbjct 12172 GGGACCAGCTTTT 12160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588965869612800