Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq8 138 1e-27 seq87 136 5e-27 seq7 132 6e-26 seq15 129 7e-25 seq6 113 5e-20 seq13 109 6e-19 seq5 102 1e-16 seq2 95.1 1e-14 seq11 87.8 2e-12 >seq8 Length=24646021 Score = 138 bits (152), Expect = 1e-27 Identities = 301/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| |||||| | | ||| || || Sbjct 23191401 CGGTCAAAACGCCCTGGTCTCAGCAAGGCGGAGTCAAGAATATCAGCTCTATTAGTAGCA 23191460 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | |||| || ||| || | | ||||| ||||||||||| |||||||| || || Sbjct 23191461 GCAACAACAATAACACCAGTGTTACCCTCAAACCCATCCATCTCAGTCAAAAGCTGATTC 23191520 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | || || || | |||||||||| || |||| |||| | | ||| | || Sbjct 23191521 AAGGTCTGCTCTCTTTCATCATTCCCT---CCACCAATCCCAGTTCCTCTCTGCCTACCA 23191577 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||||||||| || | ||||||||||| || ||| || || | | || Sbjct 23191578 ACAGCATCAATCTCGTCCACAAAGACAATACACGGAGCATTCTCCTTAGCCTTCTTGAAA 23191637 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || ||||| ||| || ||||| ||||||||||| || || | | | | | Sbjct 23191638 AGATCACGCACCCTCGAGGCCCCAACACCGACAAACATCTCAACGAACTCAGACCCCG-A 23191696 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | || ||| || ||| | ||||| ||||||||| ||| | || || ||||| Sbjct 23191697 GATGGAGAAGAAAGGCACACCGGCCTCACCAGCAATGGCTTTGGCCAAGAGGGTTTTACC 23191756 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 || || || ||| |||||||| |||| || ||| || || || | | Sbjct 23191757 AGTCCCAGGAGGACCAACGAGGAGGACACCTTTAGGGATCCGAGCACCGACCGCAGTGAA 23191816 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||||||||| ||||| Sbjct 23191817 CCTCTCAGGCTTCTTGAGAAACTCCAC 23191843 >seq87 Length=644924 Score = 136 bits (150), Expect = 5e-27 Identities = 298/444 (67%), Gaps = 2/444 (0%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || || || | ||| | ||| ||||| |||||| | | || || || Sbjct 379136 CGGTCAAAACGGCCGGGTCTAAGCAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 379077 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| ||| |||||| Sbjct 379076 GCAACAACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 379017 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACG 9371 | || ||||| | ||||||||| || | ||||| | | |||| | || || Sbjct 379016 AGCGTCTGTTCTCTTTCATCATTACCTCCACCAATACCAGTTCCTCTTTGCCTACCAACA 378957 Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||| | ||||||||||| || || || ||| ||| || ||| Sbjct 378956 GCATCAATCTCATCCACAAAGACAATACAAGGAGCGTTCTCCTTGGCCTTTTTGAAAAGA 378897 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || || ||||| || || ||||| ||||||||||| ||||| | | | | | || Sbjct 378896 TCACGGACCCTCGAAGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-AGAT 378838 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | | ||| || || || |||||| |||||||| || | || || || || || Sbjct 378837 GGAAAAGAACGGTACGCCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCCAGT 378778 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCT 9610 ||| || ||| ||||||| |||| || ||| || || || | | || Sbjct 378777 ACCGGGAGGACCAACGAGGAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAACCT 378718 Query 9611 CTCAGGTTGCTTGAGAAAATCCAC 9634 |||||| | ||| ||||| ||||| Sbjct 378717 CTCAGGCTTCTTCAGAAACTCCAC 378694 >seq7 Length=43258566 Score = 132 bits (146), Expect = 6e-26 Identities = 223/318 (70%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || ||||| || || |||| ||||||||| || Sbjct 36921380 AAACCCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGCTCCCTCTCATCATTCCCT-- 36921437 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| ||||| | | ||| | ||||| ||||||||||| |||||||| |||||| Sbjct 36921438 CCTCCCATCCCAGCTCCTCTCTGCCTCCCCACAGCATCAATCTCGTCAATGAAAACAATA 36921497 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || | || | || || | ||| | |||||| ||| ||||||||| Sbjct 36921498 CAAGGCGCCTTGGCCTTAGCCTTCTCGAACAAATCCCTAACCCTAGAGGCACCCACACCA 36921557 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9518 || || | ||||||||| | | || | || || ||| || || | ||| || Sbjct 36921558 ACGAAAAGCTCCACAAACTCAGACGCCGCGCAGGAGAAGAACGGCACTCCGGCTTCTCCA 36921617 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 || | |||| || | |||||||| || || || || |||| |||||| | ||||| Sbjct 36921618 GCCACAGCTCTAGCTAACAGAGTCTTCCCAGTCCCGGGGGGACCCACGAGGA-GACACCC 36921676 Query 9579 CGT-GGAATCTTGGCGCC 9595 | |||||||||||||| Sbjct 36921677 TTTGGGAATCTTGGCGCC 36921694 >seq15 Length=39600445 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | | | ||| ||||| |||||| | | || || || Sbjct 9762823 CGGTCAAAACGTCCTGGTCTCAACAAGGCGGAGTCAAGAATATCAGCTCTGTTGGTTGCA 9762882 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| ||| |||||| Sbjct 9762883 GCAACCACGATAACACCAGTGTTACCTTCAAAACCATCCATCTCCGTCAGAAGCTGGTTA 9762942 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACC---ACCAGCACTGCGTTGCTTTCCC 9368 | || ||||| | ||||||||| || ||| ||||| | | |||| | || Sbjct 9762943 AGCGTCTGTTCTCTTTCATCATTACCTCC---ACCGATACCAGTCCCTCTTTGCCTACCA 9762999 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || |||||||||||||| | ||||||||||| || || || ||| ||| || Sbjct 9763000 ACAGCATCAATCTCATCCACAAAGACAATACACGGAGCGTTCTCCTTGGCCTTTTTGAAA 9763059 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 ||||| || ||||| || || ||||||||||||||||| ||||| | | | | | Sbjct 9763060 AGATCACGGACCCTCGAAGCACCAACACCAACAAACATCTCAACAAACTCAGAACCAG-A 9763118 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || | | ||| || ||| || |||||| |||||||| || | || || || || Sbjct 9763119 GATGGAAAAGAACGGTACACCAGCTTCACCAGCAATGGCCTTTGCCAAGAGTGTTTTCCC 9763178 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 || || || ||| |||| || |||| || ||| || || || | | Sbjct 9763179 AGTTCCAGGAGGACCAACGAGAAGAACACCTTTCGGGATCCGAGCACCGACCGCAGTGAA 9763238 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| ||||| ||||| Sbjct 9763239 CCTCTCAGGCTTCTTCAGAAACTCCAC 9763265 >seq6 Length=47127078 Score = 113 bits (124), Expect = 5e-20 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || ||||| || || | || || |||||| || || |||||||| || Sbjct 44872399 GTGAAGGCCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAAACCCGGCATGAGCCC 44872340 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||| ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 44872339 TCGCTTCTTCAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 44872280 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 |||||||| | | | ||||||||| | |||| | ||| | ||| ||||| || Sbjct 44872279 AGCAAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 44872223 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| ||||||||| Sbjct 44872222 CCATTGGGCCTTCTTC 44872207 >seq13 Length=54295181 Score = 109 bits (120), Expect = 6e-19 Identities = 142/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || ||||| || || || || || |||||| || || |||||||| || Sbjct 40048157 GTGAAGGCCTTCGTCTCGCGAGATCAGCTCGTTGGAGAAGGTAAGCCCCGGCATGAGCCC 40048216 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 40048217 TCGCTTCTTGAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCCACGCA 40048276 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 || ||||| | | | ||||||||| | |||| | ||| | ||| ||||| || Sbjct 40048277 AGCGAACGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACTTCATGGC 40048333 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| ||||||||| Sbjct 40048334 CCATTGGGCCTTCTTC 40048349 >seq5 Length=35747119 Score = 102 bits (112), Expect = 1e-16 Identities = 275/417 (66%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | ||| ||||| || | || | ||||| || | | ||||| Sbjct 10003026 TCAAGAATGTCTGCTCTATTGGTCGCAGCAACAACGATGATACCAGTGTTACCTTCAAAC 10002967 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || || || ||||| | ||| ||||| | |||||||| || Sbjct 10002966 CCATCCATCTCAGTTAACAGCTGGTTCAAAGTCTGTTCTCTCTCATCATTACCT------ 10002913 Query 9345 CCACC-AGCACTG-----CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 ||||| | | ||| | ||| | || || |||||||||||||||| ||||| || Sbjct 10002912 CCACCGATCCCTGTCCCTCTCTGCCTCCCAACAGCATCAATCTCATCAACAAAGACGATG 10002853 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || || || || || | | || ||||| || ||||| || || ||||| Sbjct 10002852 CAAGGAGCGTTCTCCTTAGCCTTCTTGAAAAGATCACGGACCCTGGAAGCACCAACACCG 10002793 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9517 ||||||||||| ||||| | | ||| | || | || ||| || || || |||||| Sbjct 10002792 ACAAACATCTCAACAAACTCGGACCCGG-AGATAGAGAAGAACGGCACGCCAGCTTCACC 10002734 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || || ||| || ||||| ||||| || ||||| || ||| ||| || | || Sbjct 10002733 AGCTATAGCTTTCGCCAGAAGCGTCTTCCCAGTACCAGGAGGACCAATGAGCAGAACTCC 10002674 Query 9578 CCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCAC 9634 | || ||| || ||| || | | |||||||| | ||| ||||| || || Sbjct 10002673 CTTCGGGATCCGAGCACCAACAGCAGTGAACCTCTCAGGCTTCTTCAGAAACTCAAC 10002617 >seq2 Length=31488241 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || || || || || || || || |||||| || || |||||||| || Sbjct 7376989 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 7377048 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 7377049 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 7377108 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 ||| || || | | | ||||||||| | |||| | || | ||| |||| || Sbjct 7377109 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAAGC 7377165 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| ||||||||| Sbjct 7377166 CCATTGGGCCTTCTTC 7377181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || || || || || || || || || || |||||| || || |||||||| || Sbjct 27066447 GTGAAGGCCTTCGTCCCGCGAGATCAGCTCGTTGGAGAAGGTGAGCCCCGGCATGAGCCC 27066388 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || | |||||| |||||||||||||| || ||||| || Sbjct 27066387 TCGCTTCTTGAGCCAGAAGATGGAGCAGAAGCTTCCGGAGAAGAAGATCCCTTCCACGCA 27066328 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGC 117464 ||| || || | | | ||||||||| | |||| | || | ||| |||| || Sbjct 27066327 CGCGAAGGCCACGATCCTCTCGGCGAAAGTCTGAGA---TCCATCGATCCACTTCAAAGC 27066271 Query 117465 CCATTTCGCCTTCTTC 117480 ||||| ||||||||| Sbjct 27066270 CCATTGGGCCTTCTTC 27066255 >seq11 Length=45114658 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/189 (70%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || || ||||| || || | || || |||||| || || |||||||| || |||||| Sbjct 34047527 CCTTCGTCTCGAGAGATCAACTCGTTGGAGAAGGTTAACCCAGGCATGAGCCCTCGCTTC 34047468 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | ||| | || | |||||| |||||||||||||| || || || || || || Sbjct 34047467 TTAAGCCAGAAGATCGAGCAGAAGCTACCGGAGAAGAAGATCCCTTCGACGCAAGCGAAG 34047408 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | | | ||||||||| | |||| | ||| | ||| |||| ||||||| Sbjct 34047407 GCGACGATCCTCTCGGCGAAAGTCTGAGA---TCCGTCGATCCACGTCATGGCCCATTGG 34047351 Query 117472 GCCTTCTTC 117480 ||||||||| Sbjct 34047350 GCCTTCTTC 34047342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970652330240