Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_014792.1 Length=169285 Score E Sequences producing significant alignments: (Bits) Value seq82 136 4e-27 >seq82 Length=657493 Score = 136 bits (150), Expect = 4e-27 Identities = 279/415 (67%), Gaps = 0/415 (0%) Strand=Plus/Plus Query 141393 TTTTCTTCAACGCCCTTGTTGTTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCAT 141452 |||||||||| |||| | || || || | ||| | |||| |||||| ||| ||||||||| Sbjct 460866 TTTTCTTCAATGCCCCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCAT 460925 Query 141453 AAAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACA 141512 | |||||| | ||| || || || || | | ||| ||||| ||||||||||| ||| Sbjct 460926 ATTGGATAAAATATAGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACA 460985 Query 141513 GCCGTTTGGAAATGTTTCCAGAACGGAATAACACCAGTATGCTTGACTTCACCCATACCG 141572 || |||| |||||||| | || |||||| ||||||||| |||| || | | Sbjct 460986 GCACTTTGAAAATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTA 461045 Query 141573 ATTTTCGAACCTTCAGCACGAATCATGCCAACGTTGATACCGATACCCGCCCGCTTACTG 141632 || |||| | |||||||| | ||| | || ||||| || || || || | | Sbjct 461046 ATAGGACTACCTACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAA 461105 Query 141633 ATATATTCGATGATTGAATTGGCGGTCTTATTGATTGACTTCAGGGAGTCAGCAGCTTCG 141692 | ||||| | || ||| | | || || || || | || ||| || ||| Sbjct 461106 ACATATTTTACAATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCA 461165 Query 141693 ATAACCACACAGGAACTGAACTGCCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTG 141752 || | ||||| || || || || || ||||| ||||| | || | ||| || ||||| Sbjct 461166 ATTAAAACACATGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTC 461225 Query 141753 GGCAACGAAACCTGTCTTGTGGATACTGCATCATAAAAACGGCAAACGTGCTTCA 141807 || || |||| | || || | |||| ||||||||| ||||| |||| Sbjct 461226 GGTAAAGAAATTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCA 461280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541574684755200