Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq82 172 8e-38 >seq82 Length=657493 Score = 172 bits (190), Expect = 8e-38 Identities = 304/442 (69%), Gaps = 2/442 (0%) Strand=Plus/Plus Query 33121 AACTTGTTAATATGTACTGTATAATCAATATTACGAATACGGGTTTCTTCAGTACCTTTA 33180 || || ||||| ||||||| |||||||| | ||| | | |||||||| | || || Sbjct 460824 AATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTA 460883 Query 33181 TTATTTTTCAATACCAGAAGCTTTTCAACTTCCAAATGCCACATAGGATAGTTAATA-TT 33239 |||||||| || || | | |||||| ||| |||||||| || ||||| ||| || Sbjct 460884 TTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTT 460943 Query 33240 ACCACTACCNNNNNGAACACCACCTTGGCTACAGCTCTTAACACCGGTAGTAAAATGTTT 33299 || || || ||| || ||||| |||| || ||| | | ||||||||| Sbjct 460944 GCCGCT-CCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTT 461002 Query 33300 CCAGAATGGAATGACCCCAGTGTGGGAAACTTCCCCCGAGCGGATACGAGATCCTTCAGC 33359 | || ||||| ||||| || | |||| || | ||| || ||| | || Sbjct 461003 ATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGC 461062 Query 33360 ACGAATAGCACCACCATTAATACCAATACCGGCACGGCGGGAAATATATTTCATTATCGC 33419 |||||| ||| ||||||||||||| || || || | |||| |||||| | || | Sbjct 461063 ACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGA 461122 Query 33420 TTTTGATGTTTCTCCGATAGATTCAAGAGAGTCACCGGATTCAATTTTAACGCATGAGCT 33479 | | || | ||||| || ||| ||| | |||||||| ||| |||||||| Sbjct 461123 ACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACATGAGCT 461182 Query 33480 AAATTGACGAGTTGGAGTTCTTACACCAGAAAGAATTGGTGTCGGTAGAGAAATTTCAAA 33539 |||||| ||||| |||||||| || ||||| | |||||||||||||| |||||||| || Sbjct 461183 AAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAA 461242 Query 33540 ATTACTAGCGGCATTATAAAAA 33561 | | | ||||||||||||| Sbjct 461243 AGTTGAAATGGCATTATAAAAA 461264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752591855197440