Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_015293.1 Length=30651 Score E Sequences producing significant alignments: (Bits) Value seq82 150 4e-32 >seq82 Length=657493 Score = 150 bits (166), Expect = 4e-32 Identities = 193/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 2001 ACAACAATTTCAGTGGTGTACTTTTCTTGACCTTGTTGGTCAGTCCATTTGCGGGTTTTT 2060 ||||||||||| || ||||| |||| ||| | ||| || |||||| | |||| Sbjct 205893 ACAACAATTTCTGTAGTGTAGCGTTCTAAACCATTTTGATCCTGCCATTTTCTAGTTTGC 205952 Query 2061 AACTTGCCTTCAATGTATAGCTTACTACCCTTACGTACATACTCGCCGATTATTTCAGCT 2120 || |||||||| |||| | | ||| || || | ||| ||||| ||||||||| Sbjct 205953 AATGATCCTTCAATATATACTTGAGAACCTTTTCGAAGATATTCGCCTGCAATTTCAGCT 206012 Query 2121 AACTTTCCAAAAACAACAATTCTGTGCCACTCGGTTTCTTCTTTTGGCTCGCCAGTGCTT 2180 || || ||||| | ||| ||||| ||||| || |||| |||||| || ||||| || Sbjct 206013 AATTTACCAAATAAAACTATTCTATGCCATTCAGTTTTTTCTTTATTTTCTCCAGTATTT 206072 Query 2181 TTATCCTTCCATTTTTCGCTAGTTGCTAGAGTTAGGTTTGCCACTGCATTTCCGTTAGGT 2240 ||||| ||||| ||||| |||||||| || | || | || ||||| || ||||| Sbjct 206073 TTATCTTTCCAATTTTCTGAAGTTGCTAATGTCATATTCACTACCGCATTACCATTAGGC 206132 Query 2241 ATGTAACGAATTTCTGGATCTTGACC 2266 || ||||||| ||| ||||||||||| Sbjct 206133 ATATAACGAACTTCAGGATCTTGACC 206158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97959999307456