Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_015584.1 Length=75960 Score E Sequences producing significant alignments: (Bits) Value seq1 147 1e-30 >seq1 Length=46747018 Score = 147 bits (162), Expect = 1e-30 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 64693 CGGCGCGATCCACTTCTTTTTGGACGACTACCGTTTTGAGACGGCGTTTACAAGCCCTGA 64752 |||||| | |||||||| | ||||||||||| || ||||| | | | ||||| || Sbjct 34907075 CGGCGCACTGCACTTCTTCCTTGACGACTACCGATTCGAGACCGTCTGGTCGAGCCCAGA 34907016 Query 64753 GAGGACGCTGGGGCGAGTTACAGCGGTCGGTGGTGCCCTGACGCCGGATTTCAGTTTGTG 64812 | | || || || |||||| || | ||| |||||||| |||||||| | || Sbjct 34907015 GCGCCTTCTCCCCCGCGTGCAAGCGGTTGGAGCTGCTCTGACGCCCGATTTCAGCCTCTG 34906956 Query 64813 GCGCGATATGCCGCGTGCAGCGCAGCTTTGGAACGTGTACCGGTCCCGGTGGTGTGGCGC 64872 ||| || ||||| || || || | | |||||||| ||||| ||| ||||| ||||| Sbjct 34906955 GCGGGACATGCCACGGGCTGCAGCGGTCTGGAACGTCTACCGCAGCCGCTGGTGCGGCGC 34906896 Query 64873 GTACTGGCAGAGCCAGGGCGTGAAGGTCATTCCTACGGCCTGCTGGGCACGCTCAGACAC 64932 |||||||||| ||||| | |||| | || || || |||||||| | ||||||| Sbjct 34906895 GTACTGGCAGTCGCAGGGGATCGAGGTGCTCCCAACCGCGTGCTGGGCGACCCCAGACAC 34906836 Query 64933 GTTCGACTTCTGCTTTGAGGG 64953 ||||||||||||||| || || Sbjct 34906835 GTTCGACTTCTGCTTCGACGG 34906815 Score = 82.4 bits (90), Expect = 4e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 63148 GTAGCTCAATTGGTAGAGCAGCGGTCTCCAAAGCCGCCGGTTCCCCGTTCGAGTC 63202 ||||||||||||||||||||| |||||||||||||||||||||| |||||| || Sbjct 34903325 GTAGCTCAATTGGTAGAGCAGTGGTCTCCAAAGCCGCCGGTTCCAGGTTCGACTC 34903271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242943125775456