Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8 107 2e-18 seq12 98.7 1e-15 >seq8 Length=24646021 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||||||| || | || ||||| |||||| |||||||| ||| || | || | Sbjct 14311192 AGTTCCTGAATTGAAGAGAGTCGGAGACGCATGAGTAAACCATCTCTGAGACATTAAATG 14311133 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| || | ||||| ||||| || || || || | ||| || | ||| | Sbjct 14311132 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 14311073 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| |||||||| ||||| | ||| || | ||| || || |||||| | || | Sbjct 14311072 CATATGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 14311013 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 |||||| || ||||| |||| ||| ||| || ||||| ||| ||| Sbjct 14311012 TGTTTTGAACCCAAAGTAGTCGTACTCAAAATCACGATCATAAATGATT 14310964 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | || | ||||||| || |||| | | |||||| | ||||||| Sbjct 14311518 CCTCCTTGGTCAACGTAGCGAGCAGTATCATTGAAAACACGCAGCATTGGAAGAATACCA 14311459 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||| |||||||| | || | || || || |||| Sbjct 14311458 TTAGATGTTCCATTTGTGCCACGAATGTAACTTCCTGTCGCACGGATGTTGTGAACTGAA 14311399 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || |||| ||| | |||||| || | |||||||||||| Sbjct 14311398 ACACCAATACCCCCAGCTGATTTACTTATAACTGCACACTCCTTCAATGTATCATAAATT 14311339 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || ||||| || |||| Sbjct 14311338 CCCTCAATGCTATCGTCCTTCAT 14311316 >seq12 Length=46391361 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||||||| || | || ||||| |||||| |||||||| || || | || | Sbjct 30920759 AGTTCCTGAATTGAAGAGAGTCGGAGAAGCATGAGTAAACCATCGCTGAGACATTAAATG 30920700 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 || |||| || | ||||| ||||| || || || || | ||| || | ||| | Sbjct 30920699 GTAAGTTTTGATTGCGGAATCAATATCTTCTTTGTGAATGCCAACAGAAACCCTCATGAG 30920640 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||||| ||||| | ||| || | ||| || || |||||| | || | Sbjct 30920639 CATGTGCTGAGGTCTCTCAACCACTTTCCCATGGACTTTTAAGAGGTATGATCTCTCAAG 30920580 Query 48779 TGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATT 48827 ||||| || ||||| |||| |||| ||| || ||||| ||| ||| Sbjct 30920579 AGTTTTGAACCCAAAGTAGTCGTATTCAAAATCACGATCATAAATGATT 30920531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099131728640