Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_016650.1 Length=48072 Score E Sequences producing significant alignments: (Bits) Value seq18 259 1e-64 seq8 192 2e-44 seq9 107 6e-19 seq1 89.7 2e-13 >seq18 Length=36757632 Score = 259 bits (286), Expect = 1e-64 Identities = 604/907 (67%), Gaps = 67/907 (7%) Strand=Plus/Plus Query 28031 CTGCTCGGGGTCCACCACCGAGAATCGGATTCGACGGATGAAGTACCGGGAGAAGATCGG 28090 ||| ||| ||||| ||||||||| ||||| || |||||||||||||||||||||||||| Sbjct 22717053 CTGGTCGTTGTCCAGCACCGAGAACCGGATGCGCCGGATGAAGTACCGGGAGAAGATCGG 22717112 Query 28091 GTGGATACCCTCACTCACTCCAGGCATCTTGGCGATCGTGCCTGTCGGCGCAACCGTGGT 28150 ||||||||||||||| |||||||||||||| ||||| || |||||||| || |||||| Sbjct 22717113 GTGGATACCCTCACTGACTCCAGGCATCTTCGCGATGGTCCCTGTCGGGGCCACCGTGCG 22717172 Query 28151 CGTCTTGACCGGCGTCGGGATACGCAACTGGTGTGCGAAGTCCCGTGCTTCCATCTGGAC 28210 | ||||||||||| |||||| ||||||| || ||| ||| || | | | ||| Sbjct 22717173 CTTCTTGACCGGCACCGGGATCCGCAACTCATGGCTGAACTCCTCGGCCGCTCTGTCGAC 22717232 Query 28211 GATCAGGCGGTAGC-AACGCAGCTCCTCGCGGAA---CTCGTCACTGTGCGGAGCGTCCG 28266 |||| | | | |||| || ||| || ||| | | || || | || Sbjct 22717233 -CTCAGCGGCCATCTCCCGCAAGAAAGCGGTGAACCGCTTGTCTCCG---GGTGCCTGCG 22717288 Query 28267 AGTACCGGATGCCACGCAGAGCCAGGTGGGATGCGACTCCCAGGTGACCCACGCCGATCC 28326 | |||| ||| ||| |||| | ||| || ||||| ||||| || || ||||| | Sbjct 22717289 AATACCTACGGCCTGTCAGGGCCAAATAGGAGGCCACTCCGAGGTGCCCAACACCGATGC 22717348 Query 28327 GGCGCTGTCGTGCGA-GCTGGTCCTGTTG---CTTCGGATCGTTCACGTCACCGAACGTG 28382 | || | ||||| | | ||| | | ||||||||| || | |||||| Sbjct 22717349 GCCGGT----TGCGATCCAGAACCTCTCGGCTCTTCGGATCAGCGACCGCTGAGAACGTC 22717404 Query 28383 GCTCGGACCAGGAATCGTGCCACCAGGCGGTGTGCCCTCCAGAGTCCGGTCCGGTCGATG 28442 || |||| |||||| || | || ||| ||||| || | || || | |||| | Sbjct 22717405 GCCCGGATCAGGAACCGCGTCATCAGACGGTGGGCTCGGATCAGGTCGATGTAGTCGGTC 22717464 Query 28443 TTTCCCGAATCATCAACGAACGCAGCGAGATTCACGTGCCCGAGATTGCAATTTTCCCAC 28502 || || | || |||||||| ||||| || | |||||| || ||||| |||||| Sbjct 22717465 TTCCCGGCGTCGGTGACGAACGCCGCGAGGTTGATGTGCCCTAGGTTGCAGGGCTCCCAC 22717524 Query 28503 GGGGTCAACGCGATCTCACCGCACGGATTCGTGCAGACCACGGTCTCCACTTCGCCGTCG 28562 || || || |||||| |||||||| || |||||||| || | || ||| || Sbjct 22717525 GGCTCCAGCGTGATCTCCCCGCACGGGTTGGTGCAGACGACCTCGTTGGGCTCACCGACG 22717584 Query 28563 TTCGACAGGTCCGAGTTCCAGGTACCGGGCTCGCCGTTGTTCAGTGCACCCTTCGAGAGC 28622 || |||||| || ||| | || |||||||||||| | || |||| ||||| Sbjct 22717585 TTGGACAGGCTGCTGTCCCACATCCCCGGCTCGCCGTTGCGTACGGCTCCCTCGGAGAGA 22717644 Query 28623 TCGTCCAGCACCCGGACGGCCTGGGCCGAAC-CGGGATGCTCGGG--GA---TGCCCTGG 28676 | | |||||||||| |||| | || | |||| || |||| || ||| | Sbjct 22717645 GCCTTCAGCACCCGGTGTGCCTTCGTGGAGCGCGGGTTGAGCGGGTCGACAGGAGCCTTG 22717704 Query 28677 GCGAGATCCCAGAACTCCTCGTTCACCTCTACCGAGATATTCGTCGTCCAGTGCTTGCCG 28736 || || ||||||| | |||| |||||| |||||||| ||||| |||||||| ||| Sbjct 22717705 GCCAGGCTCCAGAACGCATCGTCCACCTCGACCGAGATGTTCGTGGTCCAGTGAGATCCG 22717764 Query 28737 GACTGGGC--CTTGCAGTGGATGAA---CTCCAG---GATC------------------T 28770 ||| | |||| || | |||| |||||| |||| | Sbjct 22717765 --CTGTCCTGCTTGATGTTGGTGAACGTCTCCAGTGAGATCCGCTGTCCTGCTTGATGTT 22717822 Query 28771 GGGG-----------------GTCATCCCAGCGCATCATCGCCATGCGAGCTGAGCGGCG 28813 || | ||| ||||| ||||||||||||||||||| || ||||| Sbjct 22717823 GGTGAACGTCTCGCCCTGCCAGTCCGCCCAGTGCATCATCGCCATGCGAGCCGACCGGCG 22717882 Query 28814 ATTGCCGCCCGACACAACGCATTCCGCGAGATGGTGGTCGATCTCCATTGCCCCGAGACC 28873 | || || | ||| || || | ||||| ||||||||||||||| || ||||||| Sbjct 22717883 AACACCTCCGGCCACCACACACTGCGCGATGGCGTGGTCGATCTCCATCGCATCGAGACC 22717942 Query 28874 CGTGAGC 28880 || ||| Sbjct 22717943 GGTCAGC 22717949 Score = 107 bits (118), Expect = 6e-19 Identities = 233/346 (67%), Gaps = 11/346 (3%) Strand=Plus/Plus Query 36449 GTACACCCCGAGCTGGAAGTCATCTCCCGGCATGGCACCAGTCTTGTTGTCTCGCACCAG 36508 |||||| |||||||||||||| || ||||| | || ||||||| ||| || || | Sbjct 22718259 GTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGGACTCG 22718318 Query 36509 GACTTCGCCGGTCTCTTCGTCCTCGACCACGAGGTCGATGAACCCTTTCACCTGGACGCC 36568 | || ||| ||| || |||| ||| ||||||| | || ||| ||| || Sbjct 22718319 AAGCTCCCCG------TCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 22718372 Query 36569 GTCCAGGTCTACGTCGAACTCAAGCTCGACAGCCGGCTCTCCGTCCGGCGTCACCCAAGG 36628 ||| || || | ||||| | ||||||| || ||| |||||||| |||||||| Sbjct 22718373 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 22718432 Query 36629 CTTCTGCTCCGGGTGCTTCTCGTACCACGCTATGTACTTCCCGCACTGATCCTGGCCCAC 36688 || ||| ||| | |||| |||||| | | ||||| || ||| ||| |||| || Sbjct 22718433 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 22718489 Query 36689 GTTGAACCGACGCTCTACGTCGGCTTCACCGCGATACGGCCCCGAGGCAAACCAGAAGTC 36748 | || |||| ||||| | ||| | |||| ||||| || || ||| | || Sbjct 22718490 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 22718549 Query 36749 AAAGTTCGGCGTGTCCTC-GCACAGCTTCGCAACGTCGTTCGAGTA 36793 |||||||| || ||||| | || || |||||||||| | ||| Sbjct 22718550 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC-CAACGTCGTTGGCGTA 22718594 >seq8 Length=24646021 Score = 192 bits (212), Expect = 2e-44 Identities = 552/842 (66%), Gaps = 64/842 (8%) Strand=Plus/Minus Query 4676 TCCTCCAGCAGCTCGCCCGCAAGATCGACATGGGTCCGACCGGCGTTACCGTCCCCTACT 4735 || |||||||| |||||| ||| | |||||| | || ||| | |||| ||| Sbjct 19507193 TCGTCCAGCAGTTCGCCCAGAAGGTGCCGATGGGTACCACGGGCCAGAAGATCCCGCACT 19507134 Query 4736 GGGATGGTGAAGTCACCGCCGCATGGACTGCGGAAGGTGGCAAGAAGCCGCTGACCAAGG 4795 ||| || || || | ||| |||| | || |||| || |||||| | ||||||| Sbjct 19507133 GGGTCGGCGACGTGAGTGCCCAGTGGATCGGTGAGGGTGACATGAAGCCCATCACCAAGG 19507074 Query 4796 GCGGTTTCAACATG--TTCGGCGTTCAGCCGGCC----AAGATCGCCACGATCTTCGCCA 4849 || |||||| |||| | || | ||| |||||||| |||||||||| Sbjct 19507073 GC------AACATGACTTCGCAGACCATCGCGCCCCACAAGATCGCGACGATCTTCGTGG 19507020 Query 4850 TGAGCTCCGAGGTCGTGCGAGCCAACCCCGAGGGTTACATCGAGACCATGAAGGAGAAGG 4909 | | ||| ||| || |||||||||| ||| | | |||||| |||| Sbjct 19507019 CGTCTGCGGAGACCGTCCGTGCCAACCCCGCCAACTACCTGGGAACCATGCGTACCAAGG 19506960 Query 4910 TCGCGGAGGCGTTCGCTGTCGCGTTCGACAACGCGGGCTTCCACGGTACGAACACCCCGT 4969 | ||| || ||||| | ||||||||| ||||| | ||||| || ||| ||||| Sbjct 19506959 TGGCGACCGCCTTCGCGATGGCGTTCGACGGCGCGGCGATGCACGGCACCGACAGCCCGT 19506900 Query 4970 TCGGTGCGTACATTGACCAGACCACGAAGGCCGTCAGCCT------CACCCCGGTTGACG 5023 || | ||||| | |||||||| |||||| || | |||| | | || Sbjct 19506899 TCCCGACCTACATCGGTCAGACCACCAAGGCCATCTCGATTGCTGACACCACCGGTG--- 19506843 Query 5024 ACACCACGACC---TACGACGCGCTCAAC---AACTCGCTTGAGC-TCCTGGTCGAGGAC 5076 |||||||| |||||| | | | ||| || ||||| | ||||| | ||| Sbjct 19506842 ---CCACGACCGTGTACGACCAGGTGGCCGTGAACG-GCCTGAGCCTGCTGGTGAACGAC 19506787 Query 5077 GGCAAGCGCCTGAGCGGTTTCCTTCTGGACGAGAAGTCCGAGCCGCTCATCAACGGTGCG 5136 |||||| || | |||||||||||| | |||||||| || | ||||| ||| Sbjct 19506786 GGCAAGAAGTGGACCCACACCCTTCTGGACGACATCACCGAGCCGATCCTGAACGGCGCG 19506727 Query 5137 ACGGACAAGAACAACCGTCCGCTGTTCCTGGATGCGAACTACACCGAGAGCAACGACCTC 5196 | |||| ||||| || ||||||||| | || ||| |||| ||| || ||| | | Sbjct 19506726 AAGGACCAGAACGGTCGCCCGCTGTTCATCGAGTCGACCTACGGTGAG-GCCGCGAGCCC 19506668 Query 5197 ATGC-GTCGTGGCCGCATCCTCTCGCGTCCCGCGATGTTCGCCGACAAGGTCGGCACCGC 5255 | | || ||||| ||| || | ||||| | || || |||| | |||| Sbjct 19506667 GTTCCGTTCGGGCCGGATCGTCGCCCGTCCGACCATCCTCAGCGACCACGTCG------- 19506615 Query 5256 TGCGACCCAGGCCGCTGCGGAGACCATCGGCTACGCCGGTGACTGGTCCAAGGTTCTCTG 5315 || ||| | | ||| |||||| | ||||||| ||| || | |||| Sbjct 19506614 TGG-----AGGGCACCACGG------TCGGCTTCATGGGTGACTTCTCCCAGCTCATCTG 19506566 Query 5316 GGGCCAGATCGGTGGCATCAGCTACGACGTGTCGGATCAGGCGACCCTGACTCTCG--AC 5373 |||||||||||| || | || ||||||| |||||||||||||||||| || | || Sbjct 19506565 GGGCCAGATCGGCGGTCTGTCCTTCGACGTGACGGATCAGGCGACCCTGAACCTGGGCAC 19506506 Query 5374 GGT---GAGC-------TCGTCTCGCTGTGGGAGCACAACCTCGTTGCAGTCCGTTGCGA 5423 || |||| |||||||||||||| ||||||||||||| ||||||||| ||| Sbjct 19506505 CGTCGAGAGCCCGAACTTCGTCTCGCTGTGGCAGCACAACCTCGTCGCAGTCCGTGTCGA 19506446 Query 5424 GGCTGAGTTCGCTATCCACGTCCACGACAAGGATGCGTTCGTGAAGCTGACCAAGGGCGT 5483 |||||||| ||| ||||| | ||||| || |||||||| |||||||| | || Sbjct 19506445 GGCTGAGTACGCGTTCCACTGCAACGACGCCGAGGCGTTCGTCGCTCTGACCAACGTGGT 19506386 Query 5484 CA 5485 || Sbjct 19506385 CA 19506384 >seq9 Length=46179939 Score = 107 bits (118), Expect = 6e-19 Identities = 233/346 (67%), Gaps = 11/346 (3%) Strand=Plus/Minus Query 36449 GTACACCCCGAGCTGGAAGTCATCTCCCGGCATGGCACCAGTCTTGTTGTCTCGCACCAG 36508 |||||| |||||||||||||| || ||||| | || ||||||| ||| || || | Sbjct 16532085 GTACACGCCGAGCTGGAAGTCGTCACCCGGTTGGTTCCCGGTCTTGTAGTCCCGGACTCG 16532026 Query 36509 GACTTCGCCGGTCTCTTCGTCCTCGACCACGAGGTCGATGAACCCTTTCACCTGGACGCC 36568 | || ||| ||| || |||| ||| ||||||| | || ||| ||| || Sbjct 16532025 AAGCTCCCCG------TCGACCACGACGACGGCGTCGATGTATCCGCGAACCAGGATCCC 16531972 Query 36569 GTCCAGGTCTACGTCGAACTCAAGCTCGACAGCCGGCTCTCCGTCCGGCGTCACCCAAGG 36628 ||| || || | ||||| | ||||||| || ||| |||||||| |||||||| Sbjct 16531971 GTCGAGCTCGATCTCGAAGTACAGCTCGATCGCTGGCGTACCGTCCGGGGTCACCCAGAT 16531912 Query 36629 CTTCTGCTCCGGGTGCTTCTCGTACCACGCTATGTACTTCCCGCACTGATCCTGGCCCAC 36688 || ||| ||| | |||| |||||| | | ||||| || ||| ||| |||| || Sbjct 16531911 CTCCTGGCCCG---GAGTCTCCCGCCACGCGAAGAACTTCTCGACCTGCTCCAGGCCGAC 16531855 Query 36689 GTTGAACCGACGCTCTACGTCGGCTTCACCGCGATACGGCCCCGAGGCAAACCAGAAGTC 36748 | || |||| ||||| | ||| | |||| ||||| || || ||| | || Sbjct 16531854 GGTGTACCGGCGCTCGATGTCTCGCTGACCGTTGTACGGACCAGACCACGTCCACCACTC 16531795 Query 36749 AAAGTTCGGCGTGTCCTC-GCACAGCTTCGCAACGTCGTTCGAGTA 36793 |||||||| || ||||| | || || |||||||||| | ||| Sbjct 16531794 GAAGTTCGGGGTCTCCTCGGTGAAGGCTC-CAACGTCGTTGGCGTA 16531750 >seq1 Length=46747018 Score = 89.7 bits (98), Expect = 2e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 46426 CCATCCCCGTTCGTCTAAT-GGCAGGACGCCGCGCTCTGGACGCGGTAATCGAGGTTCGA 46484 || |||||||||||||||| || | |||||| ||||||||| |||||| ||||||||| Sbjct 34903251 CCTTCCCCGTTCGTCTAATCGGTAAGACGCCTGGCTCTGGACCAGGTAATTGAGGTTCGA 34903192 Query 46485 GTCCTTGACGGGGAGC 46500 ||||||| |||||||| Sbjct 34903191 GTCCTTGGCGGGGAGC 34903176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153706288398208