Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_016653.1 Length=46586 Score E Sequences producing significant alignments: (Bits) Value seq18 214 5e-51 seq8 120 9e-23 >seq18 Length=36757632 Score = 214 bits (236), Expect = 5e-51 Identities = 480/708 (68%), Gaps = 30/708 (4%) Strand=Plus/Plus Query 27372 GTCCACTACTGAGAATCTGATTCGACGGATGAAGTACCGGGAGAAGATCGGGTGGATACC 27431 ||||| || ||||| | ||| || ||||||||||||||||||||||||||||||||||| Sbjct 22717062 GTCCAGCACCGAGAACCGGATGCGCCGGATGAAGTACCGGGAGAAGATCGGGTGGATACC 22717121 Query 27432 CTCACTGACTCCAGGCATCTTTGCGATCGTGCCGGTAGGAGCAACCGTGGTGGTCTTGAT 27491 ||||||||||||||||||||| ||||| || || || || || |||||| |||||| Sbjct 22717122 CTCACTGACTCCAGGCATCTTCGCGATGGTCCCTGTCGGGGCCACCGTGCGCTTCTTGAC 22717181 Query 27492 CGGGGTCGGGATACGTAACTGATGTGCGTAGTCACGAGC--CTCGGACTGAAC-CAGGAA 27548 ||| |||||| || |||| ||| | | || || ||| | | || | ||| Sbjct 22717182 CGGCACCGGGATCCGCAACTCATGGCTGAACTCCTCGGCCGCTCTGTC-GACCTCAG--- 22717237 Query 27549 ACGG-TAGAT-CCGCAGTTCCTCTCGGAAGTCCTCGTTGGCCGGCGCATCCGAGTAGCGG 27606 ||| | | ||||| | ||| || || | || || | ||| || | Sbjct 22717238 -CGGCCATCTCCCGCAAGAAAGCGGTGAACCGCTTGTCTCCGGGTGCCTGCGAATACCTA 22717296 Query 27607 ATGCCACGGAGAGCCAGGTGGGAGGCAACTCCCAAGTGACCCACACCGATTCGACGCTGT 27666 ||| || |||| | |||||| ||||| | ||| || |||||||| || || | Sbjct 22717297 CGGCCTGTCAGGGCCAAATAGGAGGCCACTCCGAGGTGCCCAACACCGATGCGCCGGTTG 22717356 Query 27667 CGAGCGAGCTGGTCCTGTTGCTTCGGATCGTTTACGTCACCGAACGTAGCTCGGATCAGG 27726 ||| | || || | ||||||||| || | |||||| || ||||||||| Sbjct 22717357 CGATCCAGAACCTCTCGGCTCTTCGGATCAGCGACCGCTGAGAACGTCGCCCGGATCAGG 22717416 Query 27727 AACCGTGCAACCAACCGGTGTGCTCGGTAAAGCCCGATGGTGTCCACATGACCGGTGTCA 27786 ||||| | | || ||||| |||||| || ||||| ||| | |||| ||| Sbjct 22717417 AACCGCGTCATCAGACGGTGGGCTCGGATCAGGTCGATGTAGTCGGTCTTCCCGGCGTCG 22717476 Query 27787 TCTACGAACGCCGCCAGGTTGACGTGTCCCAGGTTGCAGTTCTCCCACGGGGTAAGTGCG 27846 ||||||||||| ||||||| ||| || ||||||||| ||||||||| || | | Sbjct 22717477 GTGACGAACGCCGCGAGGTTGATGTGCCCTAGGTTGCAGGGCTCCCACGGCTCCAGCGTG 22717536 Query 27847 ATCTCACCACAAGGGTTCGTGCAGACCGCC-CGTTCAACCTCCCCGTCGTTGGACAGGTC 27905 ||||| || || ||||| |||||||| || |||| ||| ||| ||||||||||| Sbjct 22717537 ATCTCCCCGCACGGGTTGGTGCAGACGACCTCGTT-GGGCTCACCGACGTTGGACAGGCT 22717595 Query 27906 GGAGTTCCAGGTACCAGGCTCACCGTTGTTCAGTGCGCCCTTGGAGA----TTTCAG--C 27959 | || ||| | || ||||| |||||| | || |||| ||||| ||||| | Sbjct 22717596 GCTGTCCCACATCCCCGGCTCGCCGTTGCGTACGGCTCCCTCGGAGAGAGCCTTCAGCAC 22717655 Query 27960 CAGGACTTTCTTTGCGTGAACACCCATGTCGGTGTCCTCGTCGTCATCAGCGTT------ 28013 | || | ||| |||| | | | || || | |||| || ||| || Sbjct 22717656 CCGGTGTGCCTT--CGTGGA-GCGCGGGT---TGAGCGGGTCGACAGGAGCCTTGGCCAG 22717709 Query 28014 GTTCCAGAACCTCTGGTCAACTTCGACGGAGATGTTCGTGGTCCAGTG 28061 | |||||||| | ||| || ||||| |||||||||||||||||||| Sbjct 22717710 GCTCCAGAACGCATCGTCCACCTCGACCGAGATGTTCGTGGTCCAGTG 22717757 Score = 87.8 bits (96), Expect = 5e-13 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 28112 CCCAGCGCATCATTGCCATTCGAGCCGAACGGCGATTACCGCCAGACACAACACATTCCG 28171 ||||| ||||||| ||||| |||||||| |||||| ||| || | ||| ||||| | || Sbjct 22717849 CCCAGTGCATCATCGCCATGCGAGCCGACCGGCGAACACCTCCGGCCACCACACACTGCG 22717908 Query 28172 CGAGATGATGGTCAATCTCCATCGCTCCCAGACCGGTCAGC 28212 ||| ||||| ||||||||||| | |||||||||||| Sbjct 22717909 CGATGGCGTGGTCGATCTCCATCGCATCGAGACCGGTCAGC 22717949 >seq8 Length=24646021 Score = 120 bits (132), Expect = 9e-23 Identities = 541/843 (64%), Gaps = 66/843 (8%) Strand=Plus/Minus Query 4688 TCCTCCAGCAGCTCGCCCGCAAGATCGACATGGGTCCGACCGGCGTAACCGTTCCGTACT 4747 || |||||||| |||||| ||| | |||||| | || ||| | | ||| ||| Sbjct 19507193 TCGTCCAGCAGTTCGCCCAGAAGGTGCCGATGGGTACCACGGGCCAGAAGATCCCGCACT 19507134 Query 4748 GGGATGGTGAAGTCACCGCTGCGTGGACCGCAGAAGGTGGCAAGAAGCCCCTCACCAAGG 4807 ||| || || || | || ||||| || || |||| || ||||||| ||||||||| Sbjct 19507133 GGGTCGGCGACGTGAGTGCCCAGTGGATCGGTGAGGGTGACATGAAGCCCATCACCAAGG 19507074 Query 4808 GCGGCTTCGACATGTTCGGTGTTCAGCCGGCC----AAGATTGCCACGATTTTCGCCATG 4863 || | | ||| |||| | || | ||| ||||| || ||||| |||| || Sbjct 19507073 GCAACAT-GAC---TTCGCAGACCATCGCGCCCCACAAGATCGCGACGATCTTCG---TG 19507021 Query 4864 AGCTCTGAGGT---CGTGCGAGCTAACCCCGAGGGTTACATCGAGACCATGAAGGAGAAG 4920 |||| || ||| || || ||||||| ||| | | |||||| ||| Sbjct 19507020 GCGTCTGCGGAGACCGTCCGTGCCAACCCCGCCAACTACCTGGGAACCATGCGTACCAAG 19506961 Query 4921 GTCGCGGAAGCATTCGCGGTTGCCTTCGACAACGCCGGTTTCCATGGTACGAACACCCCG 4980 || ||| || |||||| | || |||||| ||| | | || || || ||| |||| Sbjct 19506960 GTGGCGACCGCCTTCGCGATGGCGTTCGACGGCGCGGCGATGCACGGCACCGACAGCCCG 19506901 Query 4981 TTCGGTGCGTACATCGACCAGTCCACCAAGGCTGTCAGCCTT------ACCCCGGCTGAT 5034 ||| | ||||||| ||| |||||||||| || || ||| | | || Sbjct 19506900 TTCCCGACCTACATCGGTCAGACCACCAAGGCCATCTCGATTGCTGACACCACCGGTGCC 19506841 Query 5035 CCGGC----TACGACCTACGATGCGTTCAACAACTCGCTCGAGGTT-CTGGTCGAAGACG 5089 || | ||||||| | | || | ||| | || ||| | ||||| | |||| Sbjct 19506840 ACGACCGTGTACGACC-AGGTGGCCGTGAACGGC---CT-GAGCCTGCTGGTGAACGACG 19506786 Query 5090 GTAAGCGTCTGAGCGGCTTCCTCTTGGATGAGAAGGCTGAGCCGCTCATCAACGGTGCGA 5149 | ||| || | | ||| |||| || | | |||||| || | ||||| |||| Sbjct 19506785 GCAAGAAGTGGACCCACACCCTTCTGGACGACATCACCGAGCCGATCCTGAACGGCGCGA 19506726 Query 5150 CGGACAAGAACAACCGTCCGCTGTTCCTGGATGCCAACTACACCGAGACCAACGA-CCTT 5208 |||| ||||| || ||||||||| | || | | |||| ||| || ||| || Sbjct 19506725 AGGACCAGAACGGTCGCCCGCTGTTCATCGAGTCGACCTACGGTGAGGCCG-CGAGCCCG 19506667 Query 5209 ATGCGTCGTGGCCGCATCCTCTCGCGTCCCGCCCTGTTCGCGGACCGCGTTGGTACCGCT 5268 | ||| ||||| ||| || | ||||| || | || |||| ||| | | Sbjct 19506666 TTCCGTTCGGGCCGGATCGTCGCCCGTCCGACCATCCTCAGCGACCACGTCG-------T 19506614 Query 5269 GCGACCCAGGCCGCTCCCGAGACCATCGGCT--ATGCCGGTGACTGGAGCAAGGTTCTCT 5326 | ||| || || || |||||| ||| ||||||| | || | ||| Sbjct 19506613 GG-----AGG--GCACC----ACGGTCGGCTTCATG--GGTGACTTCTCCCAGCTCATCT 19506567 Query 5327 GGGGCCAGATCGGTGGCATCAGCTACGACGTTTCGGATCAGGCAACGCTGACCCTCG--A 5384 ||||||||||||| || | || |||||| |||||||||| || |||| ||| | | Sbjct 19506566 GGGGCCAGATCGGCGGTCTGTCCTTCGACGTGACGGATCAGGCGACCCTGAACCTGGGCA 19506507 Query 5385 CGG---------CGAACT-CGTTTCGCTGTGGGAGCACAACCTTGTCGCTGTCCGTTGCG 5434 | | |||||| ||| ||||||||| |||||||||| ||||| |||||| || Sbjct 19506506 CCGTCGAGAGCCCGAACTTCGTCTCGCTGTGGCAGCACAACCTCGTCGCAGTCCGTGTCG 19506447 Query 5435 AGGCTGAGTTCGCTATCCACGTCCACGACGTGGAGTCGTTCGCCAAGCTGACCAAGGGCG 5494 ||||||||| ||| ||||| | |||||| ||| |||||| | |||||||| | | Sbjct 19506446 AGGCTGAGTACGCGTTCCACTGCAACGACGCCGAGGCGTTCGTCGCTCTGACCAACGTGG 19506387 Query 5495 TCA 5497 ||| Sbjct 19506386 TCA 19506384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148951166098176