Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq477 159 1e-34 >seq477 Length=38297 Score = 159 bits (176), Expect = 1e-34 Identities = 288/419 (69%), Gaps = 4/419 (1%) Strand=Plus/Minus Query 10664 GATTCGCTTAAAGAAGCTGGCGCCTTCACTGGGGCTCCTATCGAGAAAGAGATCACCTGG 10723 || ||| | |||||| ||||||||| || || || | |||||||| ||||||||| Sbjct 13744 GAATCGTTGAAAGAACATGGCGCCTTTACCGGTCGCCCGGTAGAGAAAGAAATCACCTGG 13685 Query 10724 AAACAGGGCGATAAGGAACTGACTGCAACCGTGTACGTCCGGCCCTTGTCGTACAGCACA 10783 || |||||||| || |||||||| ||||| |||| || ||||| ||| ||| ||| Sbjct 13684 AAGCAGGGCGAGAAAGAACTGACGGCAACGGTGTTTGTACGGCCTTTGGGTTACTACACT 13625 Query 10784 GCTGTTTCTGACCTTCTGGCCATGAATGGCAAGGTGGATGGCGTAGCGGGTCGGATAGCC 10843 || || || |||| || | ||| || || |||||||| || ||||| || || Sbjct 13624 GCGCGATCAGATATTCTCGCGGTAGGTGGAAAAGTTGATGGCGTTGCTGGTCGCATCGCA 13565 Query 10844 GCGTCAATCGTGGATGAAGAGGGTAAGCCGGTATTCACGCCGGCAGATATCACCGGCGAG 10903 || || || ||||| | || |||| ||||| || || ||||||||||| || ||| Sbjct 13564 GCTTCTATTTGTGATGAGAATGGCCAGCCAGTATTTACCCCTGCAGATATCACTGGTGAG 13505 Query 10904 GCCGATCCCGGTCGCGGCGCGCTGGATGGAAACCTGACCATCGCCCTGCTCACCGTGATC 10963 || ||||| | ||| || ||||| ||||| | || | || |||| | || Sbjct 13504 GCGGATCCGGATCGTGGTGCGCTTGATGGTGCTTTAACAGTGGCTTTGCTGGTGGCCATT 13445 Query 10964 GCCGAGGTGAACAACCTGGGAAAGACG--ACCAGCTCAGCGAACTAGATGAGGTGTGGCA 11021 ||||| || ||||||||||||||| ||| |||||| | || || | ||| Sbjct 13444 CAAGAGGTCAATAACCTGGGAAAGACGGAGCCA--TCAGCGCAGACGACGAAGCCTGGTG 13387 Query 11022 TGAGCTGGTGATGTGCGGGATTGGCGGCAGAACCATCGCAGAAGCCAAGTCGCGTCTCA 11080 || | || || || ||||||||||| || | ||||| || || |||||||| Sbjct 13386 CGAATTAGTCCTGAATGGTATTGGCGGCAGGACAGTGGCAGAGGCTCAGGAGCGTCTCA 13328 Score = 149 bits (164), Expect = 2e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 13370 GCGAACGCACAAGCAACTGCCTTCCAGGCCCAGCTGGCGGCATTTGCGAGCACCGCTGCA 13429 || || || ||||| || || || || || || ||||| |||||||| || || || Sbjct 10505 GCTAATGCTCAAGCTACAGCGTTACAAGCACAACTGGCAGCATTTGCATCTACGGCAGCT 10446 Query 13430 ATCCCAATCGTAGGCCCGCTGTTGGCCCCGGCGGCGGCTGCTTCGGCTGCCGGCATCACC 13489 || || ||||| |||||| ||||| ||||| ||| || | ||||| | || Sbjct 10445 ATACCTATCGTCGGCCCGGCATTGGCTCCGGCCGCGATGGCAACTGCTGCTACTGTAACG 10386 Query 13490 GCTCCAATGGTTGCCGGAGTTGCTGCGTCCGCCCTTGCTGGCATGGCTCACGATGGGATT 13549 || ||||| |||| | || |||| | | ||| |||| ||||| || ||||| ||| Sbjct 10385 ATGCCTATGGTGGCCGCAATTTCTGCAGCTGGTCTTTCTGGTATGGCCCATGATGGTATT 10326 Query 13550 GATGCTGTTCCGGAGACCGGCACCTGGTTACTCCAGAAGGGCGAGAGGGTGACGACGGCA 13609 ||||||||||| || || || |||||||| || || |||||||||||||| ||||| || Sbjct 10325 GATGCTGTTCCTGAAACGGGTACCTGGTTGCTTCAAAAGGGCGAGAGGGTAACGACTGCT 10266 Query 13610 GAGACGAGCGCAAAGCTCGA 13629 | ||| |||||||| || || Sbjct 10265 GGGACAAGCGCAAAACTGGA 10246 Score = 134 bits (148), Expect = 5e-27 Identities = 257/372 (69%), Gaps = 29/372 (8%) Strand=Plus/Minus Query 9344 GACGACCCAGGAACCGGCAGGAGCATTTCCGACAATATCGCGTTGCGCTGGAACGGTCGT 9403 || || || | ||| ||| | |||||| |||| |||||||| |||| ||||| |||||| Sbjct 15062 GATGATCCGGAAACAGGCCGCAGCATTGCCGATAATATCGCTGTGCGTTGGAATGGTCGT 15003 Query 9404 CTGTTCAAACGCACGGGCGACTTAGGGTTCAGAATTGGCGTTCTGCATGGTGCCGTTCTT 9463 ||| ||||||| || || ||| || || || || || |||||||| || || || Sbjct 15002 GAGTTTAAACGCAACGGAAACCTAGCCTTTAGGATCGGTGTGCTGCATGGAGCTGTGCTG 14943 Query 9464 CCCAAGAAAGGGGAGCGCTCGGACAAGACTGCGAATGCCCCGACGCCGCACTGGAGACTT 9523 |||||| | | | || || | ||||||||| || ||||||||| |||| Sbjct 14942 ----AGAAAGC--ATCCC---GATAAAGCCAAGAATGCCCCAACTCCGCACTGGCGACTA 14892 Query 9524 CTTGAGTTCGGGACAGAAGACATGCGGGCTCAGCCTTTCATGCGAAGCGCTCTGGCAGAC 9583 | || || || || ||| | ||||||||||| |||||||||||| || |||||| Sbjct 14891 TTGGAATTTGGTACCGAAAATATGCGGGCTCAACCTTTCATGCGACCGGC---GGCAGAG 14835 Query 9584 AACATCGCAG--AAGTCA-CAAGCACTTTCGTATCTGAATACGAGAAAGGCATCGATAGG 9640 | || ||| | || || | | || ||||| |||||| | |||| ||||| ||| Sbjct 14834 AGCAGCGCCGCTGAGGCATCCAATACGTTCGTTGTTGAATATGGAAAAGCTATCGACAGG 14775 Query 9641 GCCAT--CAAGCGCGCAGCCAAGAAGGCTGCTCAGGGG--TGAGTATGTACCCGCCAATC 9696 || || ||| | ||||||||||| ||||| || ||| | | ||||| Sbjct 14774 GCAATAGCAA--GAGCAGCCAAGAA--------AGGGGAAAGATGATGATCGCACCAATT 14725 Query 9697 TTTAAGGTCTGT 9708 |||||||||||| Sbjct 14724 TTTAAGGTCTGT 14713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172752377180032