Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq16 123 2e-23 seq114 100 2e-16 seq2 100 2e-16 seq3 93.3 3e-14 seq1 89.7 4e-13 >seq16 Length=39632211 Score = 123 bits (136), Expect = 2e-23 Identities = 198/283 (70%), Gaps = 6/283 (2%) Strand=Plus/Plus Query 29811 CACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAG 29870 ||||||| | || |||||||| || || | | |||||||| || || || | || Sbjct 38024977 CACGTGAGTTCGATACACGTGAGCATCCCCAATGACATGGACAAAATCACCAGGGACAAG 38025036 Query 29871 CCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTAC 29930 | |||||||| | |||| | || || ||||||||| ||||||||||| || || Sbjct 38025037 TTCACACACGTGAGCGAGCATGCAAGTAAGAAGAGAGTAGGAAGCGATGTTAAACGGCAC 38025096 Query 29931 CCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCAC 29990 || || ||||| ||| |||| | ||| || | ||| ||||||||||| || || ||| Sbjct 38025097 ACCAAGGCCCATATCCGCCGAACGCTGATACATCTGGCACGAGAGCTCCCCTTCCGCCAC 38025156 Query 29991 GTAAAACTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30047 || ||||| | ||| |||||||||||||||| ||||| || | || || Sbjct 38025157 ATAGAACTGCGCAAACA---TGTGGCACGGAGGAAGCGCCATCAGCTTGAGATCAGAAGG 38025213 Query 30048 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTC 30090 |||||| || | | ||||| |||| || || || |||||| Sbjct 38025214 GTTCCAAGCAGATAATATGATACGCCGATCATCAGGATTGTTC 38025256 >seq114 Length=481428 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 455462 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 455403 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 455402 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 455343 Query 29997 CTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30053 ||| | ||| ||||||| |||||||| ||||| || | ||| || ||||| Sbjct 455342 CTGTGCAAACA---TGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 455286 Query 30054 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 || ||| || || || | || || || |||||| |||| Sbjct 455285 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 455244 >seq2 Length=31488241 Score = 100 bits (110), Expect = 2e-16 Identities = 156/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Minus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | ||| | || || || ||||| ||| |||||||| ||||| || || Sbjct 13040184 GACATGAGCTAGGATGCATGTAAGAAGTGAGTATGAGGCAATGTTAAACGGTACACCAAG 13040125 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||||||||||||||||| |||||||| Sbjct 13040124 ACCCATATCTGCTGAGCGCTGATACATTTGACACGAGAGCTCTCCGTTTGCAACGTAAAA 13040065 Query 29997 CTG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30053 ||| | ||| ||||||| |||||||| ||||| || | ||| || ||||| Sbjct 13040064 CTGTGCAAACA---TGTGGCAAGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCA 13040008 Query 30054 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 || ||| || || || | || || || |||||| |||| Sbjct 13040007 AGCTGACATTATTATCCGGCGATCATCAGGATTGTTCTTGAT 13039966 >seq3 Length=51870232 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 29878 ACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGC 29937 |||||||| | |||| | || || ||||||||| || |||||||| || || | || Sbjct 35473419 ACGTGAGCTAGCATGCAAGTAAGAAGAGAGTAGGAAGCAATGTTAAACGGCACATCAAGG 35473360 Query 29938 CCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAAC 29997 ||||| ||| | || | ||| || | || || || ||||| || || ||| || ||| Sbjct 35473359 CCCATATCCGCTGAACGCTGATACATCTTGCATGAAAGCTCCCCTTCCGCCACATAGAAC 35473300 Query 29998 TG---ACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAG 30054 || | ||||| ||||||||||| || ||||| || | ||| |||||||| Sbjct 35473299 TGTGCAAACATG---TGGCACGGAGGCAGCGCCATCAGCTTGAGGTCAGAAGGGTTCCAA 35473243 Query 30055 GCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 || | | ||||| |||| || || || |||||| |||| Sbjct 35473242 GCAGATAATATGATACGCCGATCATCAGGATTGTTCTTGAT 35473202 >seq1 Length=46747018 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 29877 GACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAG 29936 ||| ||||| | || | || || || ||||| ||| |||||||| ||||| || || Sbjct 3084334 GACATGAGCGAGGATACATGTAAGAAGGGAGTATGAGGCAATGTTAAACGGTACACCAAG 3084275 Query 29937 CCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAA 29996 ||||| || | || | ||| || | ||||| || |||||||| | | |||||||| Sbjct 3084274 ACCCATATCAGCTGAGCGCTGATACATTTGACATGAAAGCTCTCCATTGGCAACGTAAAA 3084215 Query 29997 CTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGC 30056 |||| | ||||||| |||||||| ||||| || | ||| || ||||| || Sbjct 3084214 CTGAGCAAACATGTGGCATGGAGGAAGTGCCATCAGCTTAAGGTCAGAAGGATTCCAAGC 3084155 Query 30057 GCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 30095 ||| || || || | || || || |||||| |||| Sbjct 3084154 CGACATTATAATCCGTCGATCGTCAGGATTGTTCTTGAT 3084116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408610747482848