Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq82 123 8e-24 >seq82 Length=657493 Score = 123 bits (136), Expect = 8e-24 Identities = 222/324 (69%), Gaps = 3/324 (1%) Strand=Plus/Plus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 ||| ||||| || || |||| || || |||||||| || |||||||| || | || | Sbjct 205868 CATTTGCATTGTACCTCCAATATTTACAACAATTTCTGTAGTGTAGCGTTCTAAACCATT 205927 Query 26010 CTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTT 26066 | ||| || || | |||| || | || ||||| || || || |||||||| Sbjct 205928 TTGATCCTGCCATTTTCTAGTTTGCAATGATCCTTCAATATATACTTGAGAACCTTTTCG 205987 Query 26067 CAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGT 26126 || || ||||| || || || |||| || ||||| | || | | ||||||||| || Sbjct 205988 AAGATATTCGCCTGCAATTTCAGCTAATTTACCAAATAAAACTATTCTATGCCATTCAGT 206047 Query 26127 CACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAAT 26186 |||||| ||||| || || | ||||| ||||| ||||||| || |||| || || Sbjct 206048 TTTTTCTTTATTTTCTCCAGTATTTTTATCTTTCCAATTTTCTGAAGTTGCTAATGTCAT 206107 Query 26187 GTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACC 26246 || | || || ||||||||||| ||||| | || ||||| | || | | || Sbjct 206108 ATTCACTACCGCATTACCATTAGGCATATAACGAACTTCAGGATCTTGACCTAAATGCCC 206167 Query 26247 GACAAGGATTACTTTATTTACGCC 26270 | || || ||||||||||| || Sbjct 206168 AATCAGAATAACTTTATTTACACC 206191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159814988580416