Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_018087.3 Length=166687 Score E Sequences producing significant alignments: (Bits) Value seq82 154 2e-32 >seq82 Length=657493 Score = 154 bits (170), Expect = 2e-32 Identities = 558/858 (65%), Gaps = 20/858 (2%) Strand=Plus/Plus Query 141801 CATTAAATTGTTTAATTGAATACCATAATCCATATGACGAATACGGTTTTCTTCAATGCC 141860 ||| || || || | ||| | ||||||| | ||||| | | |||||||||||||| Sbjct 460820 CATCAATTTATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCC 460879 Query 141861 CTTATTGTTCTTAAGAACCATAAGGTTTTCACATTCTAAATGCCAAATAGGCCAGTACGC 141920 | |||| || || | ||| | | ||||| ||| |||||||| || || | | Sbjct 460880 CCTATTATTTTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATAT 460939 Query 141921 AGTAGCAGAACCTTTACGAATACCACCTTGAGAACATGAATGGACCGCTGCATTTTTAA- 141979 ||| || | || | || || ||||||||||| || | || || | ||| || Sbjct 460940 AGTTGCCGCTCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGC---ACTTTGAAA 460996 Query 141980 --GTTTCCAAAATGGTGTTACACCAGTGTGTTTAACTTCACCTGGACCAATTTTAGACCC 142037 |||| |||| || | |||||| || |||| || | ||| | || Sbjct 460997 ATGTTTATAAAAAGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACC 461056 Query 142038 TTCGGCACGGATTGCACCACCGCCGATACCAATACCAGCACGTTTAGAAACATATTTTAC 142097 | | ||||| ||| ||| | |||||||| || || |||| ||||||||||||||| Sbjct 461057 TACTGCACGAATTTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTAC 461116 Query 142098 AATAGCTGATGTACTTTCAGTAATTGAATCTAGGCTATCGCCGGTTTCAATTAAAACACA 142157 ||||| ||| | | |||| |||||||| |||| | ||||||||||||||| Sbjct 461117 AATAGAACTAGTAGTAGCGTTAATAGAATCTAGATTATCATCACATTCAATTAAAACACA 461176 Query 142158 TGAACTAAATTGACGAGTTGGGGTACGAACACCGGCAAGAATAGGAGTAGGTAAACTAAC 142217 ||| |||||||| ||||| || || | ||| || | | ||| || || |||||| || Sbjct 461177 TGAGCTAAATTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAA- 461235 Query 142218 TTGTTTTAA--TGATGTTGCATCATAAAAATCTTTTACGTATTGAATACGTTTATCTAAA 142275 | || || ||| | |||| ||||||| | ||||| | || | ||| | Sbjct 461236 -TTTTGAAAGTTGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTAATATTTTTG 461294 Query 142276 GGCTCATCTTG-ATGTAAACACATACCAATGAGTATAAACATAAATTGTGGTGTTTCATA 142334 || | || | | | ||| ||| | || || | | | | |||||| | ||||||| Sbjct 461295 GGAT-ATTTAGAAAATAAGCACGCAGATATTAGAACATATAAAAATTGGGCGCTTTCATA 461353 Query 142335 AATTTTACCAGAAGAT-CGATCTTTTACAAGATACTTATCTTTAACTTGCATCGCACCTG 142393 ||||| || | || || | || || | ||| || ||| | ||| | | ||| Sbjct 461354 TATTTT-CCCGCTTATGCGGTTTTGTATCAAATATTTTCCTTCTAATTGTTTTACCGCTG 461412 Query 142394 CATATGTAAAATTAAAATCACGGTCATGATCGATAATTGAATTTA-AACTATCATAGTCT 142452 |||||| ||| || | ||| || ||||| |||| | ||| | ||| ||| ||| Sbjct 461413 CATATGAAAAGTTCATATCGCGCCAATGATTAATAAAAGCATTCATTTCTA-AATATTCT 461471 Query 142453 GCTTTAGACCACTTTGTTAAAAGTTCTTTATCATATACACCCTGTTCTACACCA--GATT 142510 | | ||| | | | |||| | | |||||||||| | ||| | |||| || Sbjct 461472 TCATAAGAGTAATATTTTAATAAATTTTTATCATATTTA-CCTAAAAGA-ACCATTTTTT 461529 Query 142511 TAACATGATCATATAAATGGGGTGGATCAAATTGACCAAATACTTCTTTACGAAGACCAA 142570 | ||||| ||||| ||| || || |||||||||||| | ||| ||| | |||| | Sbjct 461530 TTACATGTTCATACAAACAAGGAGGCTCAAATTGACCATAAGCTTTTTTTCTAAGATGGA 461589 Query 142571 ACATTGCTAGATTTGATGCGACATATTGATAATCTGCGGATTCGACTTGAATGGAATCGG 142630 | || |||| ||| ||| | |||||||||||||| | || | ||| ||||| Sbjct 461590 ATATAGCTAATCTTGCTGCCATATATTGATAATCTGGTGTATCTGGTGAAATTAGATCGG 461649 Query 142631 CTGCAACTTTAACAATAG 142648 ||||| |||||| |||| Sbjct 461650 CTGCAGCTTTAATTATAG 461667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 533261227749120