Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq82 607 5e-169 >seq82 Length=657493 Score = 607 bits (672), Expect = 5e-169 Identities = 1452/2177 (67%), Gaps = 33/2177 (2%) Strand=Plus/Minus Query 70586 ATTTAGATAAGATCCATAAAGTAATCGCATGGGCTGCAGAGGGACTTGAAAATGTCTCAG 70645 |||||||||| || || |||||| | ||||| ||||| || ||||| | || || | Sbjct 461796 ATTTAGATAAAATTCACAAAGTATTAAATTGGGCAGCAGAAGGTCTTGATGACGTATCTG 461737 Query 70646 TATCTCAAGTTGAATTGAAATCTCATATCCAATTTTATGAAGGTATGAAGACAGAAGATA 70705 |||||||||||||||| || || || |||||| | ||| | || | ||| Sbjct 461736 TATCTCAAGTTGAATTATGTTCAAGAATTCAGTTTTATAATAATATTACTACTGTTAATA 461677 Query 70706 TTCACGAAATAATCATTAAAGCAGCAGCAGATTTAATATCGGTTGACACTCCTGATTATC 70765 |||| |||| || |||||||| ||||| ||| |||| || || || || ||||||| Sbjct 461676 TTCATGAAACTATAATTAAAGCTGCAGCCGATCTAATTTCACCAGATACACCAGATTATC 461617 Query 70766 AGTATCTCTCATCTCGTTTAGCCGTATTTCATTTACGTAAACAAGCCTATGGTGATTTTG 70825 | ||| | || | | ||||| |||| ||| | | ||| |||| |||||| | |||| Sbjct 461616 AATATATGGCAGCAAGATTAGCTATATTCCATCTTAGAAAAAAAGCTTATGGTCAATTTG 461557 Query 70826 TACCACCTCGCCT-TATCAACCATATAGCTAAGTTGACAGATAGTGGTCATTATGATAAA 70884 || ||| | | ||| ||| || || || || | ||| | ||||||||| Sbjct 461556 AGCCTCCTTGTTTGTATGAAC-ATGTAAAAAAAATGGTTCTTTTAGGTAAATATGATAAA 461498 Query 70885 GAAATTCTTGAAGATTTTACCATT--GGTGAAATTGAAGAATTAGGTAATTACATTCAGC 70942 |||| | || || |||| || | ||| | |||| | | || ||| | | Sbjct 461497 --AATTTATTAAAATATTACTCTTATGAAGAATATTTAGAAATGAATGCTTTTATTAATC 461440 Query 70943 ATGACCGTGATATGAATATTGCCTATGCAGGTATTAAGCAATTAATCGGTAAGTATTTGG 71002 || || |||||||| || | ||||||| | || |||||| || || |||||| Sbjct 461439 ATTGGCGCGATATGAACTTTTCATATGCAGCGGTAAAACAATTAGAAGGAAAATATTTGA 461380 Query 71003 TTCAGGACAGAGTTAATGGTATTATCTTTGAAACCCCTCAAATGCTTTATATG--CTTGT 71060 | || || | | | || | || | ||||| | | ||| | |||||||| || | Sbjct 461379 TACAAAACCGCATAAGCGGGAAAATATATGAAAGCGCCCAATT--TTTATATGTTCTAAT 461322 Query 71061 TGGTATGTGTTTATACTCTAAAAAGTATAGCGGCAAAGTTCGTATGAATTACATCAAAGA 71120 | ||| |||| |||||| ||| | || || | ||||||||| | | Sbjct 461321 ATCTGCGTGCTTATTTTCTAAA---TATCCCAAAAATATTAGAATGAATTACGTTCAGCG 461265 Query 71121 GTGGTATGATGCAACAAGTACATTTGAGCTATCATTACCAACACCTATTATGGGTGGTGT 71180 | ||| |||| | || || | | || ||||| ||||| |||||| ||| || Sbjct 461264 TTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGT 461205 Query 71181 ACGTACTCCAACAAGACAATTTAGTAGTTGTGTAAAGATTGACAGTGGCGATAGCCTAGA 71240 | ||||| || |||||||||| ||||| ||||| ||| |||| ||||| Sbjct 461204 TAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGA 461145 Query 71241 TTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTATGTATCCAAACGTGCAGGTATCGG 71300 ||| ||||| || || | ||||| ||||| || ||||| || |||| ||||| || || Sbjct 461144 TTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGG 461085 Query 71301 TATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCTATACGCAATGGTGAAGCAGTTCA 71360 ||| |||| ||| |||||||||||| |||| |||||||| | ||||| |||||| |||| Sbjct 461084 TATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCA 461025 Query 71361 TACTGGTTTAATACCATTCTTAAAGCATTTCCAAACAGCAGTCAAATCTTGCTCTCAGGG 71420 |||||||| || || || | || ||||| |||| || || ||||| || ||||| || Sbjct 461024 TACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGG 460965 Query 71421 AGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCTATGTGGCATTTAGAAGTTGAAAG 71480 ||| | | ||||| || || || || || || || |||||||| ||| ||||||| Sbjct 460964 AGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAG 460905 Query 71481 CCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGATAACCGTGTACGTCATTTAGACTA 71540 | ||||| || |||||||| | || ||||||| || | |||||||| | || || Sbjct 460904 TTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTA 460845 Query 71541 TGCTGTGCAATTCAATAAGCTTATGTACCAACGATTGATTA-CAGGTGGCAATATTACAT 71599 ||| || ||| | ||||| | ||||| ||| |||| |||| |||| || ||||||| Sbjct 460844 TGCAGTACAAATTAATAAATTGATGTATCAAAGATT-ATTATCAGGAAAAAAAATTACAT 460786 Query 71600 TGTTCTCACCTAATGCAGTTGAAGGTTTATATGACTCATTCTTTGCCGACCAAGATAAGT 71659 | || || || ||| |||||| | | || ||| | | ||||| || | Sbjct 460785 TATTTAGCCCGTCTGATGTTCCTAACTTATATAAATATTTTTTTTCTAATCAAGAAAAAT 460726 Query 71660 TTGAAAAGTTATATACTGAAGCTGAAGGTAATCCTATGATTATCC-----AAAAGTCAGT 71714 ||||| | ||||| | || |||| || || | ||| | |||||| | Sbjct 460725 TTGAAGAAAAATATATTCAATATGAA---AAAAATAAAAATATACGGAAAAAAAGT--AT 460671 Query 71715 AAAAGCTAGTGACTTATTTACATTGTTTGCACAAGAGCGAGCAGGTACAGGTCGTATCTA 71774 |||||| || |||||| | || | ||||| || || |||||| ||||| || Sbjct 460670 AAAAGCATTAGATTTATTTTCGTTAATCATGCAAGAAAGAACATCTACAGGACGTATTTA 460611 Query 71775 TCTTCAAAACGTAGATCACTGTAATACCAATAGCCCATTTATTGCAGAAGTTGCCCCTAT 71834 | | ||||| |||||||| |||||| | |||| |||||| | | || | | || || Sbjct 460610 TATACAAAATGTAGATCATTGTAATTCACATAGTGCATTTAATCCTAAATTATCTCCAAT 460551 Query 71835 TCGTATGAGTAACTTATGCCTTGAAATTGCATTACCAACTGAACCTATGCAGGATATTAA 71894 | ||| |||||| | |||||| | ||||| ||| || || | | ||||| | Sbjct 460550 AAGACAATCTAATTTATGCTTAGAAATTACTTTACCCACTAAATCTTTAAATAATATTGA 460491 Query 71895 TAAGCCTGAAGGTGAAATTGCATTATGTACATTAGCTGCATTCAATCTTGGTGCCATTAA 71954 | | |||| ||||||||| | ||||||||| |||| || ||| | || | ||||| Sbjct 460490 TGATAAAAAAGGAGAAATTGCACTTTGTACATTATCTGCTTTTAATTTAGGAACTATTAA 460431 Query 71955 AGATTTAGGTCGTATGGAAAAATTATCCGAATTAGTTATTAGAGCATTAGATGCTTTACT 72014 || || | | || ||||||| | |||| || | ||| | |||| || | Sbjct 460430 TAATCTAACAGATTTTAAAGAATTATCTGTATTATCAGTTCGTGCACTTGATGAAATATT 460371 Query 72015 TGATTACCAAGATTATCCAATACTAGCTGCTGAAAATGCTACCAAGCGAAGACGTACTTT 72074 || || ||| ||||||||||| |||| ||| || | | | | |||||| |||| Sbjct 460370 AGAATATCAAAATTATCCAATATTAGCAGCTAAAGAATCAGCTATTTCTAGACGTTCTTT 460311 Query 72075 AGGTGTTGGCATTATTAATTATGCTCATCACTTAGCTAAAAATGGTGTTAAATATTCTGA 72134 ||| |||| | || |||| ||| || || ||||||||||| || ||||| || Sbjct 460310 GGGTATTGGTGTAATCAATTTTGCATATTACCTAGCTAAAAATAACGTACGCTATTCAGA 460251 Query 72135 TGGCAGTGCCAACAATTTAACTCAT-GAACTCTTCGAAAGTTTTCAGTATTACCTATTGA 72193 ||| ||||| || || ||||| ||| ||||| || ||| | || ||||| |||| Sbjct 460250 TGGTAGTGCAAAAAACTTAACACATAGAACT-TTTGAAGCCATGCAATATTATTTATTAC 460192 Query 72194 AAGCAAGTTGTGATTTAGCCAAAGAACAAGGCGCTTGTCCTGCATTCCATGAGACAACTT 72253 |||| |||||||||||| |||||| |||| || ||| || ||| || | || | || Sbjct 460191 AAGCCTCTTGTGATTTAGCAAAAGAAAAAGGAGCATGTTCTTTATTTAATCACACTAATT 460132 Query 72254 ATTCACAGGGTATATTACCTATTGACCGCTA-TAATAAGTCAGTAGATGGTATTCATAGT 72312 ||| |||| ||||||||| || || || ||| || | ||| || | Sbjct 460131 ATTATTTAGGTAAATTACCTATAGATACATACAAAAAAGACA-TTGATAAAATATGCGAT 460073 Query 72313 GAAGAGTTACATCTTCCGTGGGAGCAATTGAGAGAAGATATTTTGAAATACGGTTTACGT 72372 ||| || ||| | ||| | |||| | | ||| ||| | || ||| | Sbjct 460072 GAACCATTGCATTTAGATTGGAATATATTGCGTTCTAAAATTAAAAAACATGGATTAAGA 460013 Query 72373 AATTCTACTGTATCCTCATTGATGCCAAGTGAAACAAGTTCTCAGGTATCTAATGCAACA 72432 || || || |||| || | ||||| |||||| ||||| ||||||||||||| Sbjct 460012 AACTCAACATTATCTGCACTTATGCCTTCAGAAACATCCTCTCAAATATCTAATGCAACT 459953 Query 72433 AATGGTATTGAACCACCTCGCGGTTTAATGAGCATTAAAGCAAGTAAAGATGGTATCTTG 72492 ||||| ||||||||||| | ||||| || || ||||||| | |||||||| || || Sbjct 459952 AATGGAATTGAACCACCAAGAGGTTTTATTAGTATTAAAGTATCAAAAGATGGAATATTA 459893 Query 72493 AAGCAAGTAGTACCTCATATTGGTACAATGGCTAATGAC--TATGAATTGTTGTGGAATA 72550 |||||||| | || | | | || ||| || |||||||| | ||||||| Sbjct 459892 CGTCAAGTAGTTC--CAGACTATAAAAAATTAAAATTACAATATGAATTACTTTGGAATA 459835 Query 72551 TTCCAAGCAATAATGGCTATATTGAATTAGTTGCAATCATGCAAAAGTTTGTCGATCAGG 72610 | |||| |||| ||| ||| | ||| ||| || || |||||||| ||| | ||||| Sbjct 459834 TACCAAATAATACTGGATATTTAGAACTAGCTGGTATTATGCAAAAATTTATTGATCAAT 459775 Query 72611 CAATCTCTGCGAACACAAATTATGACCCTACTAAATTCGCAAATGGCAAAGTCCCAGTTA 72670 | || || | || ||| ||||||| || | | ||| |||| |||| | || | | Sbjct 459774 CTATTTCAGTAAATACACATTATGATCCAAAAAGATTTTTCAATGACAAAATTCCTATGA 459715 Query 72671 AGCAAATTCTTAAAGATTTAATACGAGGCTATAAGCTTGGTGTTAAAACATTCTATTACC 72730 | ||| |||| | ||| || | | ||||| || ||| | |||||||| ||||| | Sbjct 459714 AACAACTTCTCTATGATCTACTCTTATCATATAAACTAGGTTTAAAAACATTATATTATC 459655 Query 72731 ATAACACCCGTGATGGT 72747 | ||||| || |||||| Sbjct 459654 AAAACACTCGAGATGGT 459638 Score = 275 bits (304), Expect = 4e-69 Identities = 766/1156 (66%), Gaps = 48/1156 (4%) Strand=Plus/Minus Query 72839 TATACAACTTT--CGATAAACGACCTAACAATGTATTAGAAGAAGATATGTTCTTAGGTC 72896 ||||||| ||| ||| ||| | || ||| | || | ||| |||||| || || | Sbjct 459497 TATACAATTTTTTCGAAAAAAAAA--AATAATCAACTAAAGGAACCTATGTTTTTTGGAC 459440 Query 72897 AACATGTAAACGTATCTCGGTACGACCAACAAAAGCTTAGTGCATTTGAAAAATTAATAG 72956 ||| ||| || | | || || || || ||||| || | |||||||||||||| | Sbjct 459439 AACCTGTCAATATTGCCCGATATGATCAGCAAAAATATAATATTTTTGAAAAATTAATTG 459380 Query 72957 AAAAACAATTGAGCTTCTTTTGGCGACCTGATGAAATAGATGTATCAAAAGACCGTTCTG 73016 |||||||| | || |||||| ||||||| ||||||||| | || ||| | | Sbjct 459379 AAAAACAACTCTCTTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAG 459320 Query 73017 ATTGGCAAAAAATGACTGACTCTGAAAAGCATATTTTCATATCAAATCTTAAATACCAAA 73076 ||| ||||| | |||| |||||| |||||||| | ||| | ||||| |||| Sbjct 459319 ATTTTCAAAATTTACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAA 459260 Query 73077 CATTGCTTGA---TAG-CATGGCTGCACGTTCTGTTAATATGGTATTACTTCCACTTGTA 73132 |||| | || || || || | | || || || || | || || ||| || | Sbjct 459259 CATTATTAGACTCTATTCAAGGAAGAA-GTCCT---AACATTGCTTTTCTACCAATTATT 459204 Query 73133 TCTTTACCTGAAGTTGAAACATGGATTGAAACATGGGCATTTAGTGAAACTATTCACTCT 73192 ||| | || ||| | ||||| ||||||||||||||| | ||| |||||||||||||| Sbjct 459203 TCTATTCCGGAATTAGAAACCTGGATTGAAACATGGTCTTTTTCGGAAACTATTCACTCA 459144 Query 73193 CGCTCATATACTCATATCTTGCGTAACCTTTTCGTAGATCCAAGTGAAGTATTTGATGAT 73252 || || ||||||||||| | | || || | |||| | | ||||||||||| Sbjct 459143 CGTTCTTATACTCATATTATTAGAAATATTGTTAATTCTCCATCTTTAATATTTGATGAT 459084 Query 73253 ATTA----CAATTAACCCTGAAATATTAA--AACGTGCTGAAAGTATCGCCAAATACTTT 73306 |||| |||| ||| ||||||| | || ||| ||| ||| || ||||| | Sbjct 459083 ATTATTTCCAATAAAC------ATATTAACGATCGAGCTAAAAATATTTGCATATACTAT 459030 Query 73307 GATGATGTGATACTGACAACTCAGTT-----CATTCAATCTCAAGGTGAAGGTACTTATC 73361 || || | ||| | ||| |||| |||| | || |||||||||| || Sbjct 459029 GACGAATTAATAAAAATTACT-AGTTATTGGCATTTATTC----GGTGAAGGTATACATT 458975 Query 73362 AGGTCAATGGTGAAGAGTATGTAGT---CTCAAAGCGTAAGCTTAAAGAGCGACTTTATC 73418 ||| || || || | ||| | || ||| | ||||||| | | | || | Sbjct 458974 TGGTAAAAGGAAAAAA-TATTAACATTACTTTAAGTTT--GCTTAAAAAAAAATTATACC 458918 Query 73419 T-TGCCGTTTGTGCTGTCAATGCCTTAGAAGCTATCCGCTTTTACGTAAGTTTCGCATGT 73477 | ||| | | ||| |||| |||||||| || | ||||| || ||||| |||||| Sbjct 458917 TATGCTTAATAAG-TGTTAATGTATTAGAAGCAATTAGATTTTATGTTAGTTTTGCATGT 458859 Query 73478 TCATTTGCTTTTGCAGAACGTGAGCTACTTGAAGGTAATGCCAAGATTATTAAACTAATC 73537 ||||| |||||||||||| | || || | ||||||||||| || ||||| | | |||| Sbjct 458858 TCATTCGCTTTTGCAGAAAGAGAATTAATGGAAGGTAATGCAAAAATTATAAGATTAATA 458799 Query 73538 GCCCGTGATGAAGCCTTGCACTTAACTGGTACTCAGATGATTCTGAATAACTGGCGAACT 73597 || | |||||||| ||||| | || || || || ||| ||||| | || | Sbjct 458798 GCAAGAGATGAAGCATTGCATCTTACAGGAACACAACATATTTTGAATCTTTTAAGAGAT 458739 Query 73598 GGCAAGGATGATCCTGAAATGCAAGAGATTGCAGAAGACCTTAAAGATGTAAGTCTT-AA 73656 | || | || |||||| | | | | ||| |||||| | ||| | | || Sbjct 458738 GTGAAAAACAATGAAGAAATGTATCAAACATCTATAGAATGTAAAGAAG-AAGCCATGAA 458680 Query 73657 GATCTTTATGGATGTTGTTGAAGAAGAAAAGCAATGGGCAAAATATCTATTCAAAGATGG 73716 || || || | | ||| ||||||| | ||||| |||||| |||| ||||||| Sbjct 458679 TATATTCATACTAGCAGCAGAACAAGAAAAAAAGTGGGCTAAATATTTATTTCAAGATGG 458620 Query 73717 GTCAATGATCGGTCTTAATGAAGAAATACTTTGCCAGTACGTTGAGTACATTGCTAATCA 73776 |||||| | || || ||| |||| |||||||| || || | || || ||| ||||| Sbjct 458619 ATCAATGCTTGGACTCAATAAAGATATACTTTGTCAATATATCGAATATATTACTAATAT 458560 Query 73777 TCGTTTACATAGCCTAGGCTTTGAAAAACCATTTGATATTAAGTCTAATCCTATTCCGTG 73836 |||| | || |||| || ||| || ||||| | | |||||||||||||| || Sbjct 458559 TCGTATGTATGCAATAGGTTTAAAAATGCCTTTTGAAAAACAATCTAATCCTATTCCTTG 458500 Query 73837 GATTAGCTCTTATCTAACAAGTGATAATGTGCAAGTTGCACCTCAAGAAACTGAAATTAC 73896 ||||| |||| |||| ||| | || || ||| || ||||| || ||||||| Sbjct 458499 GATTAATTCTTGGTTAACTTCAGATTACGTCCAGACTGCTCCACAAGAGACAGAAATTAG 458440 Query 73897 ATCGTACTTAGTTGGTCAAGTTGACTC--AAGTTTGGAAGATGATGATTTCGATGAATTT 73954 || || ||||| || ||| |||| || |||| | ||| |||| || | ||||| Sbjct 458439 CTCATATTTAGTAGGACAAATTGATTCAGAAGTAT--CTGATAATGAATTTAAAAAATTT 458382 Query 73955 GATTTATAAAAGGAAT 73970 | |||||| | |||| Sbjct 458381 AAATTATAATATGAAT 458366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335664770807392