Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq1048 1920 0.0 seq82 87.8 1e-12 >seq1048 Length=3623 Score = 1920 bits (2128), Expect = 0.0 Identities = 1371/1574 (87%), Gaps = 6/1574 (0%) Strand=Plus/Minus Query 23140 GCAGCTGCGTCGGCAACAACAGCGGCAGATTCTCTGGCTGGGATAGAAGTCAAAGCGAAT 23199 || ||||| || ||||| || ||| | || | |||| | | |||| ||||| || Sbjct 3035 GCTGCTGCTTCCGCAACGACTGCGACCGAAGCGATGGCAGTGGCTGAAGCTAAAGCCAAA 2976 Query 23200 GAGGCAGCTGAGTCCGCTGTGCTCGCATCGAAGAAGGCAACCGAGGCGTCAACCTCCGCG 23259 || || |||| || |||| || ||||| | ||| ||||| |||||| ||| ||| Sbjct 2975 GAAGCCTCTGACTCTGCTGCTCTGGCATCCACGAAAGCAACTGAGGCG---ACCGATGCG 2919 Query 23260 GGTGAAG---CCAAAATATCCCAAACAAAAGCGAAAGAGTCTGAGGATAAGGCGTATGAG 23316 | || | | |||| || || || || ||||| || || ||||| |||||| Sbjct 2918 GCTGCCGGGGCGAAAACTTCTGAACTGAATGCCAAAGAATCAGAAACGAAGGCTTATGAG 2859 Query 23317 TATGCTCAGAATGCCCAATCAAGTGTAGCGAGCGTGAAGTGGAAAGGGACTTCCGCAGAG 23376 || || ||||| ||||| | ||||| || || ||||| |||||||||||||| || || Sbjct 2858 TACGCCCAGAACGCCCAGGCCAGTGTTGCCAGTGTGAAATGGAAAGGGACTTCGGCTGAA 2799 Query 23377 ATGGACCTAACTACCGATTCGCCTAAATGGGTGAAGATTTCGCGCGCACGTATGCCTCAG 23436 |||||| | |||||||| |||| || |||||||| | || ||||||||||| ||| Sbjct 2798 ATGGACATGGCTACCGATGCGCCGAAGTGGGTGAAAGTGTCCACGGCACGTATGCCACAG 2739 Query 23437 TCGACCAGCACCGTATACATCGAAGTGATTGGCGGGGCAGGGTACGAAGCCGGGCAGCCA 23496 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2738 TCGACCAGCACCGTATACATCGAAGTGATCGGCGGGGCAGGGTACGAAGCCGGGCAGCCA 2679 Query 23497 GAGCTTGCTGCAATGGCCGATATCGTGTTGCGAACTGCTGCAGGCGATCCGAAATCGGTG 23556 | ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| || Sbjct 2678 GGGCTTGCTGCAATGGCCGATATTGTGCTGCGAACTGCTGCAGGCGATCCGAAATCGTTG 2619 Query 23557 AATGCGGTCGCTTATCGCACTATGGAATCGGCCGTGCTGTCGGTAGCTACCGTTAACACG 23616 |||||||||||||||||||||||||| ||||| ||| || | |||||||||||||||||| Sbjct 2618 AATGCGGTCGCTTATCGCACTATGGATTCGGCTGTGTTGACTGTAGCTACCGTTAACACG 2559 Query 23617 TCTGACGACAACTACGATATTTACCTCAAAGCAGGTGCTGGCTCTCAGAAGCTGGTCGTC 23676 ||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 2558 ACTGACGATAATTACGACATTTACCTCAAAGCCGGTGCTGGCTCTCAGAAGCTGGTCGTC 2499 Query 23677 AACCTGCAATCAGCCGGTGCGACGGTCGAAACTCTGGAAGTACTGGAAGTTGTGGATGCG 23736 ||||||||||| |||||||| ||||||||||||||||||||| || ||||||||| || Sbjct 2498 AACCTGCAATCTGCCGGTGCTGTGGTCGAAACTCTGGAAGTACTTGAGGTTGTGGATACG 2439 Query 23737 CTGCCTGAAGACACTGTCGAGGGGACTGTCTACCATCGCGTCATTTCCGATCAGGATGGC 23796 |||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||| Sbjct 2438 CTGCCTGAAGACGCTGTAGAAGGGACTGTCTACCATCGCGTCATTTCTGATCAGGATGGC 2379 Query 23797 TCCATTACCGGTTCGCTGGTGGGTAATGCCAGCACTGCGACCGTACTTCAAACCGCCCGC 23856 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2378 TCCATTACCGGTTCGCTGGTGGGTAATGCCAGCACTGCGACCGTACTTCAAACCGCTCGC 2319 Query 23857 CGTATTGGTGGGGTAAGCTTTGATGGCTCTGCCGATATCAATCTGCCTGGCGTTAACATC 23916 | ||||||||| || || |||||||||||| ||||||||||||||||||| || || || Sbjct 2318 CATATTGGTGGTGTTAGTTTTGATGGCTCTACCGATATCAATCTGCCTGGTGTAAATATT 2259 Query 23917 CAGGGCAATCAGAACACGACGGGCAATGCTGCTACTGCAACCAAATTACAAACGCCGCGG 23976 ||||| ||||||||||| || || ||||| || |||||||||||| | |||||||| ||| Sbjct 2258 CAGGGTAATCAGAACACCACTGGTAATGCCGCCACTGCAACCAAACTGCAAACGCCACGG 2199 Query 23977 ACAATCAACAGCGTAACGTTCGATGGCTCTGCTGACATTGCTATCCCGACGCTGGTGTCT 24036 ||||| ||||| |||||||||||||||||||| ||||| | |||||||| ||||||||| Sbjct 2198 ACAATTAACAGTGTAACGTTCGATGGCTCTGCCAACATTACCATCCCGACACTGGTGTCT 2139 Query 24037 CGTGGACCTATTACTGCACTGGAGGGTCATGCCCAGGGCGCACTGCCGGGTATTCAGATG 24096 ||||| | |||| ||||||||||| ||| ||||||||| |||| || ||||||||| Sbjct 2138 CGTGGGCGCATTAGCGCACTGGAGGGGAATGTTCAGGGCGCAATGCCAGGCATTCAGATG 2079 Query 24097 TACGAAGCCTACAACAATGGCTACCCGACAACCTACGGCAACATCTTGCATATGAAAGGT 24156 ||||||||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||| Sbjct 2078 TACGAAGCCTATAACAATGGCTATCCGACAAGCTACGGCAACATCCTGCATATGAAAGGC 2019 Query 24157 GCAGGAGCGGTTGGTGAGGGCGAGCTACTTGTCGGCTGGAGTGGAACAGATGGTGCTCAT 24216 ||| ||| ||||||||||||||| ||||| ||||||||||| ||||||| |||||| Sbjct 2018 GCACAAGCAAGTGGTGAGGGCGAGCTGCTTGTTGGCTGGAGTGGGTCAGATGGCGCTCAT 1959 Query 24217 GCGCCGGTTTATGTTCGTTCACGCCGTGATACTTCGACAGCAAACTGGTCTGGTTGGGCG 24276 |||||||||||| ||||||| ||||||||||| | ||| |||||||||||||||||| Sbjct 1958 GCGCCGGTTTATATTCGTTCTCGCCGTGATACAGTGGGAGCGAACTGGTCTGGTTGGGCG 1899 Query 24277 CAGGTCTACACTACTGCTCATAAACCCACAGCGAAAGATGTTGGGGCCGCGCAAGCTTTT 24336 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1898 CAGGTCTACACAACTGCTCATAAACCCACAGCGAAAGATGTTGGGGCCGCGCAAGCGTTT 1839 Query 24337 AGCGCATCGTACAGCACAGGGGCTGGCAATTGGACTACCGCTGAATTTATCGCATGGCTA 24396 ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1838 AGCGCGTCTTACAGCACAGGGGCTGGCAATTGGACTACCGCTGAATTTATCGCATGGCTG 1779 Query 24397 AAGGAGCGTGGTGCCTTCGAAGTACCATACTGGATGATGAAAGGTTCCTGGTCATATGCC 24456 |||||||||||||| |||||||| || |||||||||||||| |||||||||||||||||| Sbjct 1778 AAGGAGCGTGGTGCTTTCGAAGTGCCGTACTGGATGATGAAGGGTTCCTGGTCATATGCC 1719 Query 24457 GACAATAAAATTATCACTGATACAGGTGTCGGCAATATCTGTCTTGCTGGTTCGGTTGTC 24516 |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || Sbjct 1718 GACAATAAAATTATCACTGATACAGGTGTCGGTAATATCTGTCTTGCTGGTGCGGTTATC 1659 Query 24517 GAGGTTTTAGGTAACGAAGGTGCAATGACCATTCGAGTTACTACGCCTACAACGACGACA 24576 ||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| || Sbjct 1658 GAGGTTTTAGGTACCGAAGGCGCAATGACCATCCGAGTTACTACGCCTACAACGACTACC 1599 Query 24577 GGTGGTGGGATTGCCTGTGCTCAGTTCACCTATATTAATCACGGTAGCGCGTATTCCCCT 24636 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1598 GGTGGTGGGATTGCCTGTGCTCAGTTCACCTATATTAATCACGGTAGCGCGTATGCCCCT 1539 Query 24637 GCCTGGCGCAGAGATTACAACACGACTCTCAAGCCAACAGCGGCAGATGTTGGCGCATTC 24696 ||||||||||||||||||||||| ||||||| || || ||||| ||||| || || || Sbjct 1538 GCCTGGCGCAGAGATTACAACACTGCTCTCAAACCCACTGCGGCTGATGTCGGTGCGTTA 1479 Query 24697 CCGATTTCTGGCGG 24710 |||||||||||||| Sbjct 1478 CCGATTTCTGGCGG 1465 Score = 1142 bits (1266), Expect = 0.0 Identities = 717/773 (93%), Gaps = 0/773 (0%) Strand=Plus/Minus Query 24967 AACGGAAGTGTGGGGTTGGGGGTTGCAAACGGGTTAGGCGGTAATTCAATCGTTCTTGGC 25026 ||||| || | ||| |||| || | || || | ||||||||||| || ||||| || Sbjct 1103 AACGGTGGTCTTGGGCTGGGTGTGGTCAATGGTCTTGGCGGTAATTCCATTGTTCTGGGT 1044 Query 25027 GATAATGATACCGGCTTTAAACAGAACGGAGATGGAATTCTGGATGTTTACGCCAACAGT 25086 || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1043 GACAATGACACCGGCTTTAAACAGAACGGAGATGGCATTCTGGATGTTTACGCCAATAGC 984 Query 25087 GCTCATGTTTTTAGGTTCATTAATAGCACGCTGCAAAGTCTTAAGCCGTTGAGTGTAACG 25146 || ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| Sbjct 983 GCCCATGTTTTTAGGTTCATTAGTAGCACGCTGCAAAGCCTTAAGCCGTTGAGTGTAACG 924 Query 25147 GGTGACATCACGTCAAGTGCGTGGGTTTACGCCAACCGTTTTTCCATCAACAGCAGTTCT 25206 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 923 GGTGACATTACGTCAAGTGCGTGGATTTACGCCAACCGTTTTTCCATCAACAGCAGTTCT 864 Query 25207 GGCGCGTGGATCGATATGCGTAACCAGAACGTCATCTTCGGGAGGAACGCTGTAAGTACA 25266 || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 863 GGATCATGGATCGATATGCGTAACCAGAACGTCATCTTCGGGAGGAACGCTGTAAGCACA 804 Query 25267 AGCTCTGCACAAGCGTTGTTGAGACAAGACCATGCGGATCGCAAATTCTTCTTGGGTGGC 25326 |||||||||||||| ||||||||||||||||||||||| |||||||||||| | || ||| Sbjct 803 AGCTCTGCACAAGCATTGTTGAGACAAGACCATGCGGACCGCAAATTCTTCGTTGGCGGC 744 Query 25327 TTGGGAAACAGTCAGTTTGGTTTTTACATGATCAACAATTCACGTACCGCAAACGGCACG 25386 |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 743 TTGGGAAACAGTCAGTTTGGTTTTTACATGATCAACAACTCACGTACCGAAAACGGCACG 684 Query 25387 GATGCGAACGCATACCTCCAGAATGATGGTACTTGGGTTTGTGGCGGTAATGGCAGCTTT 25446 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 683 GATGCGAACGCATACCTCCAGAATGATGGTACTTGGGTTTGTGGAGGCAATGGCAGCTTC 624 Query 25447 AATGACGTTTATATCCGCTCTGACCGTCGTAGCAAACGTAATATTCGCAAGATTGAACGG 25506 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 623 AATGACGTTTATATCCGCTCTGACCGTCGTAGCAAACGCAATATTCGCAAGATTGAACGA 564 Query 25507 GCGCTCGACAAGCTGGAGCGGGTCGAAGGTGTTCTGTACGAGATTCAGGTCTGTGACCGT 25566 ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| Sbjct 563 GCGCTCGACAAGCTGGATCGGATCGAAGGTGTTCTGTACGAGATTCAGGTCTGTGACCGT 504 Query 25567 TATGAGCAGTCTGGTGGCCTCATCGCTCAGGACGTCCAGAATGTTCAGCCTGAACTAGTA 25626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 503 TATGAGCAGTCTGGTGGCCTCATCGCTCAGGACGTCCAGAATGTTCAGCCTGAACTGGTA 444 Query 25627 ACGGTTGACCATAACGATCAGTCCGGAGAGCCTCGTCTGCGTCTGAACTACAACGGCGTT 25686 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 443 ACGGTTGACCATAACGATCAGTCTGGAGAGCCTCGTCTGCGTCTGAACTACAACGGCGTT 384 Query 25687 ATCGGTATGTTGGTCGAGGCTGTGAAGGAGTTACGTGAAGAAGTGCGCGAACT 25739 ||||||||| |||| ||||| || |||||||| || | |||||||| ||||| Sbjct 383 ATCGGTATGCTGGTTGAGGCCGTCAAGGAGTTGCGCAAGGAAGTGCGTGAACT 331 Score = 183 bits (202), Expect = 2e-41 Identities = 190/246 (77%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 22868 CGCTGGCTTCGAAAAATGCGGCTAACGAGTCAGAAATTCATGCTGCTTCGAGCGCCGGGG 22927 ||||||| || |||||||||||||| || ||||||| |||||||||||||||||||| | Sbjct 3622 CGCTGGCCTCAAAAAATGCGGCTAAGGAATCAGAAACCCATGCTGCTTCGAGCGCCGGTG 3563 Query 22928 AGTCGGTGGCCAGTGCTGCTGCGGCCAAAGCTTCAGAAACCAACGCCGACGCATCGCAGA 22987 |||||| ||| |||||||| || |||||| | ||||||||||||||||||||||| |||| Sbjct 3562 AGTCGGCGGCAAGTGCTGCGGCTGCCAAAACGTCAGAAACCAACGCCGACGCATCACAGA 3503 Query 22988 AGGCTGCTGCTGGGAGTGA---ATCTGCCGCAGGTCTGAGTGCCGAGGCTGCGGCTAATA 23044 ||||||| |||| || || | |||||||| || || || | || || | | | Sbjct 3502 AGGCTGCGGCTGCCAGCGAGTCAGCTGCCGCA--TC-CAGCGCGAACGCCGCTTCCGAAA 3446 Query 23045 GCGCTACGGCGTCTGGCGAATACGCTGATGCTGCGTTAGCAAGCAAAGAAGCCGCTGCAT 23104 |||| || || | || || | ||||| || || ||||| || ||| | || ||||| | Sbjct 3445 GCGCCACCGCTGCAGGTGAGTCTGCTGACGCCGCTTTAGCGAGTAAAAATGCTGCTGCGT 3386 Query 23105 TGAGCG 23110 |||| Sbjct 3385 CCAGCG 3380 >seq82 Length=657493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 261/403 (65%), Gaps = 0/403 (0%) Strand=Plus/Minus Query 68447 ACATTCAAGTTGTCTCTGCCAACGCCAATTATGGCCGGCGTGCGCACCCCTACTCGCCAG 68506 || ||||| | ||| | || || ||||||||| | || || | || |||||||| || Sbjct 461245 ACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAA 461186 Query 68507 TTCTCCAGCTGCGTGCTGATTGAAGCTGCTGATAGTCTGAAAGGGATTAGCGCTGCGTCT 68566 || | || || | |||||| || ||||| ||| | |||| |||| | || Sbjct 461185 TTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGATTCTATTAACGCTACTACT 461126 Query 68567 TCCGCAATCATCGACTACGTGTCACGTCGCGCGGGCATTGGTATTGGCTTTGGGCGTCTG 68626 | || | | || || || | || || || ||||||||| ||| | Sbjct 461125 AGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATT 461066 Query 68627 CGTGCGCTGGGCAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTTTTTCCATTC 68686 ||||| | || ||| || | |||||||| || || ||||| | |||| || Sbjct 461065 CGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTT 461006 Query 68687 CTGAAACACTTCCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGCGGCGGCGCT 68746 ||||| || || | || || |||||||| ||||| || || ||| | || || || Sbjct 461005 TATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCG 460946 Query 68747 GCTACAGCGTTCTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTGCTGAAAAAC 68806 || || || ||||| || ||||| || ||| |||||||| | | || | ||||| Sbjct 460945 GCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAAT 460886 Query 68807 AACCGTGGCATTGAAGAGAACCGCGTTCGTCATCTCGACTATG 68849 || | ||||||||||| || | || ||||| | || |||| Sbjct 460885 AATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTATG 460843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330426458655360