Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_018855.1 Length=169158 Score E Sequences producing significant alignments: (Bits) Value seq82 170 2e-37 >seq82 Length=657493 Score = 170 bits (188), Expect = 2e-37 Identities = 303/441 (69%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 131909 CGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCTACTCCAATTATGGCAGGT 131968 ||||||||| ||||| |||| ||| || |||| || || || ||||||||| | || Sbjct 461266 CGTTTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGA 461207 Query 131969 GCTCGTACTCCAACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGTGATTCG 132025 | | | ||||| ||||| || || ||| | |||| | |||||| | |||| Sbjct 461206 GTTAGAACTCCTACTCGACAATT---TAGCTCATGTGTTTTAATTGAATGTGATGATAAT 461150 Query 132026 TTAAAATCTATTAACAAAACTTCAGCATCAATTATTGAATATATTTCTAAACGAGCTGGT 132085 || | ||||||||| ||| | || ||| | ||||| ||||| ||||||| || Sbjct 461149 CTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGA 461090 Query 132086 ATAGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGGTGAAGTT 132145 || ||||| || | ||| | ||||||||| |||| | || | | || |||| Sbjct 461089 ATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCA 461030 Query 132146 CGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAATCTTGTTCT 132205 ||||| ||| |||||| || | |||||||| |||| ||| |||||||| |||||| Sbjct 461029 TTTCATACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCT 460970 Query 132206 CAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCACTTAGAAGTA 132265 ||||| || || | ||||| || || || | |||||| || ||||| || ||| | Sbjct 460969 CAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATT 460910 Query 132266 GAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATTCGACATATG 132325 || | |||||||| | |||||||| | ||| | || ||||| | | || || | Sbjct 460909 GAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTT 460850 Query 132326 GACTACGGAATTCAAATTAAT 132346 || || | | | ||||||||| Sbjct 460849 GATTATGCAGTACAAATTAAT 460829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541168291745280