Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_018860.1 Length=156176 Score E Sequences producing significant alignments: (Bits) Value seq341 212 6e-50 >seq341 Length=107858 Score = 212 bits (234), Expect = 6e-50 Identities = 339/479 (71%), Gaps = 6/479 (1%) Strand=Plus/Plus Query 11193 ATGGGTACATATAACGTTCATGGTGGGCATAACTCAATC-GTACAAGGTGCTAACTACGG 11251 |||| || |||| | |||||||| |||| || | | |||||||| ||||||| || Sbjct 46818 ATGGCTAAGTATAGTTTACATGGTGGTCATA-CTGAGTTTGTACAAGGAGCTAACTGGGG 46876 Query 11252 TAGCAGAAAAGAACACGTTATGGATCGCCAGGTTAAAGATGCTTTAATTAGCAAGCTTCG 11311 | |||||||||| |||||||||| | ||||| ||||| | ||| | || Sbjct 46877 AAATCGAAAAGAACATATTATGGATCGTCTTGTTAAGGATGCGGTTGC-AGCTAAGTTAA 46935 Query 11312 TAGTCTT-GGTCACACAGTTTATGACTGCACAGACGAAACAGGTTCTACACAAAGCGCTA 11370 || || ||||| || |||||||| |||||| ||| ||| |||||| || | | Sbjct 46936 GAGCTTTAGGTCATACGGTTTATGATGACACAGATGAAGTAGGAAGAACACAA-GCACAA 46994 Query 11371 ACCT-ACGTAACATCGTAGCGAAATGTAATGCTCATCGAGTAGACTTAGACATTTCATTA 11429 | || | || ||||| ||||||||| ||||| || || |||| || ||||| Sbjct 46995 AACTTATCAAATATCGTTCGTAAATGTAATTCTCATGATGTTGATTTAGTTATCTCATTC 47054 Query 11430 CACTTAAATGCGTACAACGGTTCTGCTAACGGAGTAGAAGTTTGCTACTACGACCAACAA 11489 || || ||||| || | || ||||| || || |||||||| || || ||||||||| Sbjct 47055 CATTTGAATGCATATGATGGGAAAGCTAATGGCGTGGAAGTTTGTTATTATGACCAACAA 47114 Query 11490 GCTTTAGCTGCTAAAGTGTCTAAACAGCTTTCTGAAGACATCGGATGGTCTAACCGTGGA 11549 || |||||||| ||||| || || ||||| |||| ||||| ||||| || |||||| Sbjct 47115 GCATTAGCTGCAAAAGTATCAGCGCAACTTTCAAAAGATATCGGTTGGTCAAATCGTGGA 47174 Query 11550 GCTAAACCTCGTACAGACCTTTACGTATTAAATAGCACATCTGCACCTGCTATCTTAATC 11609 || ||| ||||| || || || || | | | || ||||| || ||||||||| Sbjct 47175 GCGAAAAAGCGTACTGATCTCTATGTGCTGACTGAAACCAAAGCACCAGCAATCTTAATC 47234 Query 11610 GAGCTTGGTTTCATCGATAATGAAAGCGACATGGCTAAATGGAATGTAGATAAAATCGC 11668 || ||||| |||||||||||||| || ||| | || ||| |||||||||| || || Sbjct 47235 GAACTTGGATTCATCGATAATGATGCGGATATGTCGAAGTGGCATGTAGATAATATTGC 47293 Score = 212 bits (234), Expect = 6e-50 Identities = 339/479 (71%), Gaps = 6/479 (1%) Strand=Plus/Plus Query 11193 ATGGGTACATATAACGTTCATGGTGGGCATAACTCAATC-GTACAAGGTGCTAACTACGG 11251 |||| || |||| | |||||||| |||| || | | |||||||| ||||||| || Sbjct 97230 ATGGCTAAGTATAGTTTACATGGTGGTCATA-CTGAGTTTGTACAAGGAGCTAACTGGGG 97288 Query 11252 TAGCAGAAAAGAACACGTTATGGATCGCCAGGTTAAAGATGCTTTAATTAGCAAGCTTCG 11311 | |||||||||| |||||||||| | ||||| ||||| | ||| | || Sbjct 97289 AAATCGAAAAGAACATATTATGGATCGTCTTGTTAAGGATGCGGTTGC-AGCTAAGTTAA 97347 Query 11312 TAGTCTT-GGTCACACAGTTTATGACTGCACAGACGAAACAGGTTCTACACAAAGCGCTA 11370 || || ||||| || |||||||| |||||| ||| ||| |||||| || | | Sbjct 97348 GAGCTTTAGGTCATACGGTTTATGATGACACAGATGAAGTAGGAAGAACACAA-GCACAA 97406 Query 11371 ACCT-ACGTAACATCGTAGCGAAATGTAATGCTCATCGAGTAGACTTAGACATTTCATTA 11429 | || | || ||||| ||||||||| ||||| || || |||| || ||||| Sbjct 97407 AACTTATCAAATATCGTTCGTAAATGTAATTCTCATGATGTTGATTTAGTTATCTCATTC 97466 Query 11430 CACTTAAATGCGTACAACGGTTCTGCTAACGGAGTAGAAGTTTGCTACTACGACCAACAA 11489 || || ||||| || | || ||||| || || |||||||| || || ||||||||| Sbjct 97467 CATTTGAATGCATATGATGGGAAAGCTAATGGCGTGGAAGTTTGTTATTATGACCAACAA 97526 Query 11490 GCTTTAGCTGCTAAAGTGTCTAAACAGCTTTCTGAAGACATCGGATGGTCTAACCGTGGA 11549 || |||||||| ||||| || || ||||| |||| ||||| ||||| || |||||| Sbjct 97527 GCATTAGCTGCAAAAGTATCAGCGCAACTTTCAAAAGATATCGGTTGGTCAAATCGTGGA 97586 Query 11550 GCTAAACCTCGTACAGACCTTTACGTATTAAATAGCACATCTGCACCTGCTATCTTAATC 11609 || ||| ||||| || || || || | | | || ||||| || ||||||||| Sbjct 97587 GCGAAAAAGCGTACTGATCTCTATGTGCTGACTGAAACCAAAGCACCAGCAATCTTAATC 97646 Query 11610 GAGCTTGGTTTCATCGATAATGAAAGCGACATGGCTAAATGGAATGTAGATAAAATCGC 11668 || ||||| |||||||||||||| || ||| | || ||| |||||||||| || || Sbjct 97647 GAACTTGGATTCATCGATAATGATGCGGATATGTCGAAGTGGCATGTAGATAATATTGC 97705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499626606274560