Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq82 185 1e-41 >seq82 Length=657493 Score = 185 bits (204), Expect = 1e-41 Identities = 309/447 (69%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 40684 TTCTATAACGCAATTTCGGATCGTAAACTGTCATTACCTACGCCTATTATGGCGGGTGTG 40743 || ||||| || ||||| | ||| | || ||||| || || |||||| | || || Sbjct 461263 TTTTATAATGCCATTTCAACTTTCAAAATTTCTTTACCGACACCAATTATGTCTGGAGTT 461204 Query 40744 CGTACTCCTACGCGTCAGTTCTCCAGTTGTGTTGTAATCGAATCGGGTGATTCTCTGGGT 40803 | |||||||| || || || | |||||| |||| |||| | |||| ||| | | Sbjct 461203 AGAACTCCTACTCGACAATTTAGCTCATGTGTTTTAATTGAATGTGATGATAATCTAGAT 461144 Query 40804 TCTCTGAACGCTGTTACGTCCGCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGT 40863 ||| | |||||| ||| | || || || ||| | |||||||| || || |||||| Sbjct 461143 TCTATTAACGCTACTACTAGTTCTATTGTAAAATATGTTTCTCAACGAGCAGGAATTGGT 461084 Query 40864 GTCAACGCCGGACACATTCGCGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACAT 40923 | || || ||| | ||||| || | ||| || | ||| |||||| | ||| Sbjct 461083 ATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCCTATTAGAAATGGCGAAGCATTTCAT 461024 Query 40924 ACAGGCGTTATCCCGTTCTGGAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGC 40983 || || ||| || || | ||||| |||| | || || ||||||||||| || || Sbjct 461023 ACTGGTTGTATTCCTTTTTATAAACATTTTCAAAGTGCTGTAAAATCCTGTTCTCAAGGA 460964 Query 40984 GGTGTTCGTGGTGGTGCAGCAACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAAC 41043 || ||| | ||||| || ||||| | | |||||| || |||||| ||||| |||||| Sbjct 460963 GGAGTTAGAGGTGGAGCGGCAACTATATTTTATCCAATATGGCATTTTGAAATTGAAAGT 460904 Query 41044 CTGTTGGTTCTGAAAAATAACCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTAT 41103 | || ||| | |||||||| | ||| |||||||||| | | |||||| | |||||| Sbjct 460903 TTATTAGTTTTAAAAAATAATAGGGGCATTGAAGAAAATAGAGTACGTCACGTTGATTAT 460844 Query 41104 GGCGTACAGCTTAACGATTTGATGTAT 41130 | ||||| |||| | ||||||||| Sbjct 460843 GCAGTACAAATTAATAAATTGATGTAT 460817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/84 (86%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 49470 TAAAAATTCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTG 49529 |||||| | ||||||||||||| | | ||| ||||| || ||||||||||||| ||| | Sbjct 216762 TAAAAAATACGGCCCTTTAGCTCAGT-GGTAAGAGCAGGCGACTCATAATCGCTTGGTCG 216820 Query 49530 CTGGTTCAAGTCCAGCAGGGGCCA 49553 ||||||||| |||||||||||||| Sbjct 216821 CTGGTTCAAATCCAGCAGGGGCCA 216844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570079794458880