Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq82 223 4e-53 >seq82 Length=657493 Score = 223 bits (246), Expect = 4e-53 Identities = 327/460 (71%), Gaps = 6/460 (1%) Strand=Plus/Plus Query 138531 ATTCAGTTGAACGCCATAATCCATATGACGGATACGGTTTTCTTCTACGCCTTTGTTATT 138590 ||| | ||| || ||||||| | ||||| | | |||||||| | ||| | ||||| Sbjct 460829 ATTAATTTGTACTGCATAATCAACGTGACGTACTCTATTTTCTTCAATGCCCCTATTATT 460888 Query 138591 TTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGC 138650 ||| ||||| | | | |||||| ||| |||||||| || |||||| | ||| || || Sbjct 460889 TTTTAAAACTAATAAACTTTCAATTTCAAAATGCCATATTGGATAAAATATAGTTGCCGC 460948 Query 138651 GCCGCCACGAATTCCACCCTGTGAGCATGATTTAACTGCAGTCTGAAAATGTTTCCAAAA 138710 || || | || ||| || || || || ||||| || ||| | ||||||||||| |||| Sbjct 460949 TCCACCTCTAACTCCTCCTTGAGAACAGGATTTTACAGCACTTTGAAAATGTTTATAAAA 461008 Query 138711 AGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTCAGCACGAAT 138770 ||||||| ||||||||| | |||| || | | ||| | |||| | |||||||| Sbjct 461009 AGGAATACAACCAGTATGAAATGCTTCGCCATTTCTAATAGGACTACCTACTGCACGAAT 461068 Query 138771 CATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAATTGAAGCGGA 138830 | ||| | |||||||||||||| || |||| ||| | ||||| ||||| ||| | Sbjct 461069 TTTTCCAGCATTAATACCAATTCCTGCTCGTTGAGAAACATATTTTACAATAGAACTAGT 461128 Query 138831 AGCCTTGTTGATAGACTTTA-ATGA--ATCACCTGCCTCAATAACAACACATGAACTAAA 138887 || ||| ||||| | || || | ||||| | ||||| | ||||||||| ||||| Sbjct 461129 AGTAGCGTTAATAGAATCTAGATTATCATCACAT---TCAATTAAAACACATGAGCTAAA 461185 Query 138888 CTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAAATCTGTCGAGT 138947 |||||||| ||||| | | |||| |||||| || || ||||| ||||| | ||| Sbjct 461186 TTGTCGAGTAGGAGTTCTAACTCCAGACATAATTGGTGTCGGTAAAGAAATTTTGAAAGT 461245 Query 138948 AGATACTGCTTCATAAAAACGGATAACGTGTTTTAATCTA 138987 || | || | ||||||||| ||||| || | |||| Sbjct 461246 TGAAATGGCATTATAAAAACGCTGAACGTAATTCATTCTA 461285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535529988725760