Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq82 118 2e-21 >seq82 Length=657493 Score = 118 bits (130), Expect = 2e-21 Identities = 556/874 (64%), Gaps = 13/874 (1%) Strand=Plus/Minus Query 224383 CCAACTCCAATTATGGCTGGACTACGTACTAACACTCGCCAATTTAGTTCTTGCGTAGTT 224442 || || ||||||||| ||||| | | ||| ||||| |||||||| || || || | Sbjct 461227 CCGACACCAATTATGTCTGGAGTTAGAACTCCTACTCGACAATTTAGCTCATGTGTTTTA 461168 Query 224443 AT-GAACGTTGGTGATAGTCTAGACAGCATTAGTGCTGGTAACAGTGCTATAATGCAGTA 224501 || ||| || | ||||| |||||| |||| ||| || ||| |||| | | || Sbjct 461167 ATTGAATGT-GATGATAATCTAGATTCTATTAACGCTACTACTAGTTCTATTGTAAAATA 461109 Query 224502 TATTTCTAAGAAAGCCGGTTTGGGAGTCAACTATGGTCGTGTCCGTGCAGTTGGTTCAGA 224561 | ||||| | ||| || | || | || ||| | |||||||| ||| Sbjct 461108 TGTTTCTCAACGAGCAGGAATTGGTATTAATGCTGGAAAAATTCGTGCAGTAGGTAGTCC 461049 Query 224562 AATTCGTGGTGGTGATGCTGTTCATACTGGATTGATTCCATTCCTACACGCAGTTGCTAA 224621 ||| | ||| || || |||||||||| | ||||| || || | || || | || Sbjct 461048 TATTAGAAATGGCGAAGCATTTCATACTGGTTGTATTCCTTTT-TATAAACATTTTCAAA 460990 Query 224622 AA-CTGTTAAATCTTGTTCTCAAGGTGGTGTGCGTGGTGGTGCAGCAACAGTCCACTTCC 224680 |||| ||||| ||||||||||| || || | ||||| || ||||| | | | Sbjct 460989 GTGCTGTAAAATCCTGTTCTCAAGGAGGAGTTAGAGGTGGAGCGGCAACTATATTTTATC 460930 Query 224681 CATTGTGGCATTACGAGTTTGAAGATCTTGTAGTACTAAAGAATAACAAAGGTACAGAAG 224740 || | ||||||| || ||||| | | |||| |||| ||||| | || | |||| Sbjct 460929 CAATATGGCATTTTGAAATTGAAAGTTTATTAGTTTTAAAAAATAATAGGGGCATTGAAG 460870 Query 224741 TATCTCGTGTTCGTCAGTTGGATTATTGTTTCCAAATTAATAAAACTTTCTATCAACGCT 224800 | | | || ||||| | |||||| | |||||||||||| | |||||| | | Sbjct 460869 AAAATAGAGTACGTCACGTTGATTATGCAGTACAAATTAATAAATTGATGTATCAAAGAT 460810 Query 224801 TGATTGAACGTAAAGATATTACTTTCTTCTCTCCAAGTGATGTTCCTGGTTTGTATGATG 224860 | | | | ||| | ||||| || || || |||||||||| || ||| | Sbjct 460809 TATTATCAGGAAAAAAAATTACATTATTTAGCCCGTCTGATGTTCCTAACTTATATAAAT 460750 Query 224861 CATTCTGTGCAGACCAAGAAAAATTTGAAAAGCTATACACTAAGTATGAAGCTGATCCAA 224920 || | | | | ||||||||||||||| | ||| | | | |||||| || || Sbjct 460749 ATTTTTTTTCTAATCAAGAAAAATTTGAAGAAAAATATATTCAATATGAAAAAAATAAAA 460690 Query 224921 ATATTCGTAAGAAAACTATGCCAGCACTAGAAGTGTTCTCTCAACTAATGAATGAACGTT 224980 |||| || || |||| ||| |||| |||| | || || | | ||| | ||| | Sbjct 460689 ATATACGGAAAAAAAGTATAAAAGCATTAGATTTATTTTCGTTAATCATGCAAGAAAGAA 460630 Query 224981 CTGAAACTGGACGTATCTATATCCAGAATATTGA-CTTAGTTAACGAACACTCACCATTT 225039 | || |||||||| ||||| || ||| | || | | | ||| ||| ||||| Sbjct 460629 CATCTACAGGACGTATTTATATACAAAATGTAGATCATTG-TAATTCACATAGTGCATTT 460571 Query 225040 GATCCTTCAGTAGCTCCGATTGAACAAAGTAATCTATGTCAAGAAATCGCACTACCTTCT 225099 ||||| | || |||| || |||| |||| |||| |||||| | |||| || Sbjct 460570 AATCCTAAATTATCTCCAATAAGACAATCTAATTTATGCTTAGAAATTACTTTACCCACT 460511 Query 225100 GTGCCATTCGAAGACGTAAAA--GATGATGAAAATGGTTTAATCAGTCTCTGTACTTTAG 225157 | || | ||| | |||||| |||| || ||| || ||||| ||| Sbjct 460510 AAATCTTT-----AAATAATATTGATGATAAAAAAGGAGAAATTGCACTTTGTACATTAT 460456 Query 225158 CAGCAATTAATTGGGGTAATTTCGATTCTCCAGAAGAAATGCAAGAAGCGTGTGAGTTAT 225217 | || |||||| || | | | || || | ||| | ||||| | || |||| Sbjct 460455 CTGCTTTTAATTTAGGAACTATTAATAATCTAACAGATTTTAAAGAATTATCTGTATTAT 460396 Query 225218 CAGTACGTGCATTAGATGCATTACTAGACTATCA 225251 |||| |||||| | |||| | || |||| ||||| Sbjct 460395 CAGTTCGTGCACTTGATGAAATATTAGAATATCA 460362 Score = 111 bits (122), Expect = 4e-19 Identities = 198/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 133903 ATTGAAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACT 133962 ||| ||||| |||| ||||| || | | | || || ||||||||||| ||| | Sbjct 104916 ATTAAAAAAAGATCCAGATTCCCGTAGAATTTTAGTATCTAGTTGGAATGTTGGAGAAAT 104975 Query 133963 AGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAA 134022 | ||||||| || ||||| |||||| || ||| || | || | || || Sbjct 104976 TAACAAAATGAAATTACCACCTTGTCATATATTATTTCAGTTTTATGTTTTTAACAAAAA 105035 Query 134023 GTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACAT 134082 ||| ||| || || |||||| |||||| |||| | ||| |||| || || || Sbjct 105036 ATTAAGTTGTCAACTTTACCAACGTTCTTGTGATGTATTTCTTGGATTACCTTTTAATAT 105095 Query 134083 TGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGA 134142 ||| ||| || |||| | ||||||| |||||||| |||| ||||||||||| || Sbjct 105096 AGCTAGTTATGCAATACTTATTCATATGATAGCACAACAATGTGATTTAGAAGTTGGAGA 105155 Query 134143 GTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCACGTAGAA 134191 ||| |||||| || || ||||| || | ||||| |||||| | ||| Sbjct 105156 ATTTTTATGGACAGGAGGTGATGTCCATCTATATAATAATCACATTGAA 105204 Score = 96.9 bits (106), Expect = 8e-15 Identities = 397/612 (65%), Gaps = 13/612 (2%) Strand=Plus/Minus Query 227028 TTTCTTCTGGACACCTGATGAGGTAGATTTATCTAAAGACCGAATAGATTTTAAATCACT 227087 ||| || |||| |||||| || ||||| | ||| ||| ||||||||||| || | | Sbjct 459366 TTTTTTTTGGAGACCTGAAGAAATAGATCTCTCTCGAGATAGAATAGATTTTCAA-AATT 459308 Query 227088 TACC-GATCACGAGAAGCACATATTTACTTCCAATCTAAAACGGCAAATTTTATTAGATT 227146 |||| || || || || || || ||| | ||| ||||| |||| |||||||| | Sbjct 459307 TACCTGAACATGAAAAACATATTTTTCTTAGTAATTTAAAATATCAAACATTATTAGACT 459248 Query 227147 CTGTTCAAGGTAGGGGTCCAAATTTAGTACTGTTGCCATATGCATCATTACCAGAACTTG 227206 || ||||||| || |||| || | | | | ||| | || | || ||| | | Sbjct 459247 CTATTCAAGGAAGAAGTCCTAACATTGCTTTTCTACCAATTATTTCTATTCCGGAATTAG 459188 Query 227207 AAAATTTTATTGAAACATGGTCATTTTTTGAAGGTTCTATACATAGTAAATCATATACAC 227266 ||| | |||||||||||||| |||| ||| |||| || || ||||| | Sbjct 459187 AAACCTGGATTGAAACATGGTCTTTTTCGGAA---ACTATTCACTCACGTTCTTATACTC 459131 Query 227267 ATATTATTCGAAATATATATCCAAAC-CCAAGTGAAGTTTTTGATACTATGTTGGATATT 227325 |||||||| ||||||| | | | | ||| | | | |||||| ||| | | | Sbjct 459130 ATATTATTAGAAATAT-TGTTAATTCTCCATCTTTAATATTTGATGATATTATTTCCAAT 459072 Query 227326 CCAGAAATTACATCAT-GTGCAACTGATATTTCAAAATATTATGATGATTTAGATAACTA 227384 | | |||| | || | || | |||||| | ||| ||||| || ||| |||| | Sbjct 459071 AAACATATTA-ACGATCGAGCTAAAAATATTTGCATATACTATGACGAATTA-ATAAAAA 459014 Query 227385 -TGGAACTTATTATAAGTTATTGGGTGAAGGCACTCACACCGTTAATGGTGAAAAAATTG 227443 | | ||||| | ||||| |||||||| | || || || || |||| ||| Sbjct 459013 TTACTAGTTATTGGCATTTATTCGGTGAAGGTATACATTTGGTAAAAGGAAAAAATATTA 458954 Query 227444 TTGTTGATATGTATGAGCTAAAGAAAAAACTATGGCTATGTATTAACAGTATTAATATTC 227503 || | | | ||| || |||||| ||| ||||| | | ||| ||||| | Sbjct 458953 ACATTACTTTAAGTTTGCTTAAAAAAAAATTATACCTATGCTTAATAAGTGTTAATGTAT 458894 Query 227504 TAGAAGGTATTCGTTTTTATGTTTCATTTGCGTGTTCCTGGGCATACGCCGAGA-ACAAT 227562 |||||| ||| | ||||||||| ||||| ||||| | || | || || | | ||| Sbjct 458893 TAGAAGCAATTAGATTTTATGTTAGTTTTGCATGTTCATTCGCTTTTGCAGAAAGAGAAT 458834 Query 227563 CAACTTGAGGGGAATGCTAAAATAATTAGATTGATTTGTAGGGATGAGAATTTGCATTTA 227622 || | || || ||||| ||||| || ||||| || || ||||| |||||| | Sbjct 458833 TAA-TGGAAGGTAATGCAAAAATTATAAGATTAATAGCAAGAGATGAAGCATTGCATCTT 458775 Query 227623 GCAGCAACTCAA 227634 ||| ||| ||| Sbjct 458774 ACAGGAACACAA 458763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147570167981248