Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019414.1 Length=51071 Score E Sequences producing significant alignments: (Bits) Value seq18 109 2e-19 >seq18 Length=36757632 Score = 109 bits (120), Expect = 2e-19 Identities = 379/583 (65%), Gaps = 44/583 (8%) Strand=Plus/Minus Query 34473 CGGAACGGGGAGCCCGGCTACTGGAACTCGACCTTCTCGAACGAGGGCGAGGTGAACGAG 34532 || ||||| ||||| || ||| || | | | || |||| || ||| |||||| Sbjct 22717625 CGCAACGGCGAGCCGGGGATGTGGGACAGCAGCCTGTCCAACGTCGGTGAGCCCAACGAG 22717566 Query 34533 GTGATCGCGACCAACCCTTGCGGGGAGATCGCGCTGCCTCCGACCGGCGCCTGCGTGCTC 34592 || || |||||||| |||||||||||| ||||| ||| | ||||| || Sbjct 22717565 GTCGTCTGCACCAACCCGTGCGGGGAGATCACGCTGGAGCCGTGGGAGCCCTGCAACCTA 22717506 Query 34593 GGCCACGTGAACCTCGACTTCTTCG-CGCCGAAGGTGAAGGGCGAGCACAGCGACTTCGA 34651 || ||| | ||||||| |||| | |||| | || | | | ||||| | Sbjct 22717505 GGGCACATCAACCTCGCGGCGTTCGTCACCGACGC-------CGGGAAGACCGACTACAT 22717453 Query 34652 CGGCCTGCGCCGGGCGCACGAGCTGATGACGCGGTTCCTGATCCGGGCCACGTACGGCGA 34711 || |||| ||| || ||| |||||||||||||||||||||||||| |||| | | Sbjct 22717452 CGACCTGATCCGAGCCCACCGTCTGATGACGCGGTTCCTGATCCGGGCGACGTTCTCAGC 22717393 Query 34712 CATGACCGA--CGACCAGCAGCGCGAGGTCATGCACAGCGAGCGGCGCGTAGGCGTCGGC 34769 | | || ||| ||| || ||||| || | || | |||||| | || || || Sbjct 22717392 GGTCGCTGATCCGAAGAGC--CGAGAGGTTCTGGATCGCAACCGGCGCATCGGTGTTGGG 22717335 Query 34770 CACCTCGGAGTGCAGGGCTTCCTCGCGAAGCACGGCACGC----GCTACTCCGACGC-CC 34824 |||||||||||| || |||| | | || || | || || | || || Sbjct 22717334 CACCTCGGAGTG----GCCTCCTATTTGGCCCTGACAGGCCGTAGGTATTCGCAGGCACC 22717279 Query 34825 CGTACGACCCGCAGTTCCGCAACCTGCTGACCTTCCTTGCGGACACCGTCCGC------- 34877 || | ||| || |||| ||| ||| ||||||| | |||| Sbjct 22717278 CGGA-GACAAGCGGTTC----ACCG------CTTTCTTGCGGGAGATGGCCGCTGAGGTC 22717230 Query 34878 GAC---GAGGCCCGCGAGTAC-GCCTTCCAGCTCCGCATCCCGGAGCCCGTGAAGGTGAC 34933 ||| | |||| |||| | ||| | || | || ||||||| ||| || ||| | Sbjct 22717229 GACAGAGCGGCCGAGGAGTTCAGCCATG-AGTTGCGGATCCCGGTGCCGGTCAAGAAGCG 22717171 Query 34934 GACCGTGGCGCCGACCGGCTCGATCGCGAAGCTCCCCGGAGTGAGCGAGGGCATCCACCC 34993 || ||||| ||||| || | ||||||||| | || ||||| || ||||| |||||||| Sbjct 22717170 CACGGTGGCCCCGACAGGGACCATCGCGAAGATGCCTGGAGTCAGTGAGGGTATCCACCC 22717111 Query 34994 GATCTACGCCCGGCACTTCCTGCGGCGCGTACGGTTCTCGATG 35036 ||||| | ||||| ||||| | |||||| | ||||||||| || Sbjct 22717110 GATCTTCTCCCGGTACTTCATCCGGCGCATCCGGTTCTCGGTG 22717068 Score = 84.2 bits (92), Expect = 7e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 34195 TCGAGGCGATGGAGATCGACCACGCCATCGCGGAGTGCGTGGTGTCGGGCGGTGTCCGGC 34254 |||| ||||||||||||||||||||||||||| |||| |||||| | || ||||| || | Sbjct 22717938 TCGATGCGATGGAGATCGACCACGCCATCGCGCAGTGTGTGGTGGCCGGAGGTGTTCGCC 22717879 Query 34255 GCTCTGCCCGTATGGCCAT 34273 | || || || ||||| || Sbjct 22717878 GGTCGGCTCGCATGGCGAT 22717860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163302931586496