Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019442.1 Length=60523 Score E Sequences producing significant alignments: (Bits) Value seq477 125 3e-24 seq82 107 7e-19 >seq477 Length=38297 Score = 125 bits (138), Expect = 3e-24 Identities = 186/261 (71%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 6317 TCCCGGCTCACTAATAAAGAATCGCCAGTCGCCCATTCCAAGAGATGGATTTTTACGAAA 6376 ||| ||||| | || ||||| ||||| || ||||| ||||| || | | || || Sbjct 36031 TCCAGGCTCGCAGATGAAGAAGCGCCAATCCCCCATGCCAAGCTCAGGCTGAATCCGGAA 35972 Query 6377 ACGCTTTTTTCTATCTGCCAACAAGTCAGCACGAGAACACTTCGCCTCTATCAGGCATGA 6436 |||||||| | || || | |||||| | |||||||||||||| || |||||||| || Sbjct 35971 TCGCTTTTTCCGGTCGGCAAGGAAGTCACCTCGAGAACACTTCGCTTCGATCAGGCAGGA 35912 Query 6437 TGCTGAATTTCTGAATCCCATAGCATCTGGCTGTTCTCCGGTACTGGTTACA---GCTAT 6493 ||| ||| | |||||| || || || |||||||| |||| ||| |||| || | Sbjct 35911 GGCTAGATTACGGAATCCAATTGCGTCAGGCTGTTCGCCGG---TGGATACAGCGGCAAC 35855 Query 6494 AAAGCGGTCATGAAAACAAACCTTGAACCCG---TTGCGCTTAAGGAACTTATACGCAAT 6550 |||||| ||||| ||| ||| ||| ||| |||||| |||||| | ||||| Sbjct 35854 AAAGCGATCATGGAAAGCGACCGAGAAACCGTTATTGCGC---AGGAACCGTTCGGCAAT 35798 Query 6551 CTGACAGAGTTCGCGGTGTGT 6571 | | || || |||| |||||| Sbjct 35797 CAGGCAAAGCTCGCTGTGTGT 35777 >seq82 Length=657493 Score = 107 bits (118), Expect = 7e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 24094 CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAA 24153 |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||| Sbjct 216771 CGGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAA 216830 Query 24154 TCCAGCAAGGGCCA 24167 ||||||| |||||| Sbjct 216831 TCCAGCAGGGGCCA 216844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193548837360320