Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brassica_20napus_20[refseq_20GCF_5F000686985.1_202014-05-15] 1,376 sequences; 930,507,853 total letters Query= NC_019445.1 Length=44784 Score E Sequences producing significant alignments: (Bits) Value seq477 125 2e-24 >seq477 Length=38297 Score = 125 bits (138), Expect = 2e-24 Identities = 186/261 (71%), Gaps = 12/261 (5%) Strand=Plus/Plus Query 9768 ACACACCGCGAACTCTGTCAGATTGCGTATAAGTTCCTTAAGCGCAA---CGGGTTCAAG 9824 |||||| |||| || || | |||||| | |||||| |||||| ||| ||| | Sbjct 35777 ACACACAGCGAGCTTTGCCTGATTGCCGAACGGTTCCT---GCGCAATAACGGTTTCTCG 35833 Query 9825 GTTTGTTTTCATGACCGCTTTATAGC---TGTAACCAGTACCGGAGAACAGCCAGATGCT 9881 || ||| ||||| |||||| | || |||| ||| |||| |||||||| || || Sbjct 35834 GTCGCTTTCCATGATCGCTTTGTTGCCGCTGTATCCA---CCGGCGAACAGCCTGACGCA 35890 Query 9882 ATGGGATTCAGAAATTCAGCATCATGCCTGATAGAGGCGAAGTGTTCTCGTGCTGACTTG 9941 || |||||| | ||| ||| || |||||||| || |||||||||||||| | |||||| Sbjct 35891 ATTGGATTCCGTAATCTAGCCTCCTGCCTGATCGAAGCGAAGTGTTCTCGAGGTGACTTC 35950 Query 9942 TTGGCAGATAGAAAAAAGCGTTTTCGTAAAAATCCATCTCTTGGAATGGGCGACTGGCGA 10001 | || || | |||||||| || || | | || ||||| ||||| || ||||| Sbjct 35951 CTTGCCGACCGGAAAAAGCGATTCCGGATTCAGCCTGAGCTTGGCATGGGGGATTGGCGC 36010 Query 10002 TTCTTTATTAGTGAGCCGGGA 10022 ||||| || | ||||| ||| Sbjct 36011 TTCTTCATCTGCGAGCCTGGA 36031 Score = 114 bits (126), Expect = 4e-21 Identities = 228/337 (68%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 40322 CCAGCGCGCGATCGCAAATCTGGTATACAGCAAACGCATGGGTAACAATGCTCCCGGCGA 40381 ||||| ||||| ||||| ||||||||| | | ||| |||| || || | | ||| || Sbjct 23946 CCAGCCGGCGATTGCAAACCTGGTATACGCCGATCGCCTGGGCAATAAATCACGCGGTGA 23887 Query 40382 TGGCTGGAATTACCGTGGGCGCGGGCTTATCCAGATTACCGGTTTGAATAACTATCGTGA 40441 ||||||||| || |||||||| ||||| || ||| ||||||| | | ||||| || | Sbjct 23886 TGGCTGGAAATATCGTGGGCGTGGGCTGATTCAGGTTACCGGCCAGGACAACTACCGAGC 23827 Query 40442 CTGTGGAAACGGTCTGAAAGTTGACCTGCTGGAGAATCCTGAACTGCTGGCGCAGGACGA 40501 || || | | |||||| | |||||| | | |||||| ||||||||| | |||| Sbjct 23826 GTGCGGTATTGCGCTGAAACTCGACCTGGTTGGCAATCCTCAACTGCTGGAGAGCGACGG 23767 Query 40502 ATACGCGGCTCGTAGCGCGGCGTGGTTCT-----TCTC-CGGCAAAGGCTGCATGAAGTA 40555 ||||| ||| || | ||||||| |||| || ||| ||| | Sbjct 23766 TAACGCGATGCGTTCTGCCGGCTGGTTCTGGAAATCTCGCGATTGTGGCCGCA------A 23713 Query 40556 TACCGGCGATATTGCTCGTGTAACTCTGATTATCAATGGTGGCAGGAACGGCATAGACGA 40615 | || |||||| | | ||||| | |||||||||||||| ||||| || || Sbjct 23712 TGCCAACGATATCGAATGGGTAACCCAACGTATCAATGGTGGCATCAACGGATTATCTGA 23653 Query 40616 CCGGCGAGCGCGATACATCACTGCCAGTAAGGTGCTG 40652 || | |||||| || || || ||||||||||| Sbjct 23652 TCGCCAAGCGCGGTATGACATGGCGCGTAAGGTGCTG 23616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143184860321152